PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT1G24625.1 | ||||||||
Common Name | F21J9.29, F5A9.25, ZFP7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23166.5 Da PI: 6.9606 | ||||||||
Description | zinc finger protein 7 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H AT1G24625.1 59 FSCNYCRRKFYSSQALGGHQNAH 81 89******************988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.21E-6 | 56 | 87 | No hit | No description |
PROSITE profile | PS50157 | 11.385 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MTESDDASRE TPASRGGEAS SNQDLSKPES NHVSLDLKLN DTFNDDTKST KCEANPRVFS 60 CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH HHRPYTYTSS SLGMQAHSGL 120 LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD YDDGGSDFFW PGSFRQVVEE AEAPVVVVAS 180 TESGLDLNSV AANGGVDNNS SKPDLTLRL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.1644 | 0.0 | bud| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 790684 | 0.0 | ||||
Genevisible | 265029_at | 0.0 | ||||
Expression Atlas | AT1G24625 | - | ||||
AtGenExpress | AT1G24625 | - | ||||
ATTED-II | AT1G24625 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
TAIR | Encodes a zinc finger protein containing only a single zinc finger. | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT1G24625.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
IntAct | Search Q39266 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT1G24625 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC000103 | 0.0 | AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence. | |||
GenBank | AC004133 | 0.0 | AC004133.3 Genomic sequence for Arabidopsis thaliana BAC F5A9 from chromosome I, complete sequence. | |||
GenBank | AK119018 | 0.0 | AK119018.1 Arabidopsis thaliana At1g24630 mRNA for putative zinc finger protein ZFP7, complete cds, clone: RAFL21-34-I16. | |||
GenBank | ATHZFPG | 0.0 | L39650.1 Arabidopsis thaliana zinc finger protein (ZFP7) mRNA, complete cds. | |||
GenBank | BT005629 | 0.0 | BT005629.1 Arabidopsis thaliana clone U51263 putative zinc finger protein 7, ZFP7 (At1g24625) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_564223.1 | 1e-157 | zinc finger protein 7 | ||||
Swissprot | Q39266 | 1e-158 | ZFP7_ARATH; Zinc finger protein 7 | ||||
TrEMBL | A0A384LI11 | 1e-155 | A0A384LI11_ARATH; ZFP7 | ||||
TrEMBL | Q541V6 | 1e-155 | Q541V6_ARATH; Putative zinc finger protein ZFP7 | ||||
STRING | AT1G24625.1 | 1e-156 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13999 | 17 | 25 | Representative plant | OGRP82 | 15 | 137 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT1G24625.1 |
Entrez Gene | 839077 |
iHOP | AT1G24625 |
wikigenes | AT1G24625 |