PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G03185
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 354aa    MW: 41368.6 Da    PI: 9.7836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G03185genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11152238180
                  EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
           B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                  f+k+lt+sdv    +rl ++k+ +++          +   + ++++t +d+ g+++ +k++ + ++  +vlt+GWk F+++++L e   +
  Ro01_G03185 152 FEKQLTSSDVKDGqSRLAMSKEDVQKRlmpllneneD--LNDGIEVTTYDLAGKEYPMKFKTWVSK-IHVLTGGWKAFCHDHDLIEYQHF 238
                  99********987799********999***9988443..44889****************989987.789**************976554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MSSSMILGKF SRETMTSRTD EDDIKAALNL CYIKNLVLDS EKDRQILEDT KRQSLGRIRV  60
FPNVETKQRA LQIEKQEEAI VNVAQGFPRK QQLQQGPKRK EMHIEEQEAM KVAQGLPAAN  120
PQQGLFYGNY APPNLPPVPS LQQFIEICSK PFEKQLTSSD VKDGQSRLAM SKEDVQKRLM  180
PLLNENEDLN DGIEVTTYDL AGKEYPMKFK TWVSKIHVLT GGWKAFCHDH DLIEYQHFVT  240
VWMFRNIATG NLCFVIDVRR LPVFETIKRR RRRQNASQLD VRFPISLFMK IYYSPNRFHT  300
KIELKIFNKQ TMGKLMADTI RDQYIRHPAS NALMHKASYL IQEHKYRNKE EREN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268273KRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.15e-26B3 family protein