PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G03170.1 | ||||||||
Common Name | F4C21.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 29233.8 Da PI: 4.2198 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.7 | 1.3e-15 | 137 | 238 | 2 | 93 |
EEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS. CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr. 87 +k+l++sdv k ++l+l+k+ ++e ++++ ++++++++ ++g +++e+k+ ++++++ vlt+GWk+Fv++ gL + Dfv+ + ++ AT4G03170.1 137 KKQLMSSDVDKDqCMLMLSKEQVKEKmlpfledSENPVKGIDVSVYGPDGkvQQMEFKM--WNGDKTPVLTSGWKQFVEDYGLSmTCDFVTVWMFRHi 232 699*******998999********99*****9988889************555666666..**********************988899986655555 PP SEE..E CS B3 88 sefelv 93 ++++l+ AT4G03170.1 233 KTRKLC 238 555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 6.14E-18 | 136 | 242 | No hit | No description |
SMART | SM01019 | 6.4E-12 | 136 | 241 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-17 | 136 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.5E-16 | 137 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.7E-9 | 138 | 240 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MANSTGKPTS STQEDEEATS ATEILAQLMQ DIIDREEDID DEDDIDDEVI DDEDYEVASL 60 PLLQESQANQ KQSREREEET EKNQPKRFKK QNMMKINIHD FSEETLRLIE VWYEAELDPQ 120 DIFGDNEVTR LFSRPIKKQL MSSDVDKDQC MLMLSKEQVK EKMLPFLEDS ENPVKGIDVS 180 VYGPDGKVQQ MEFKMWNGDK TPVLTSGWKQ FVEDYGLSMT CDFVTVWMFR HIKTRKLCFA 240 IHYVKFSLRD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18412173 | 0.0 | ||||
Genevisible | 255416_at | 0.0 | ||||
Expression Atlas | AT4G03170 | - | ||||
AtGenExpress | AT4G03170 | - | ||||
ATTED-II | AT4G03170 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G03170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G03170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005275 | 0.0 | AC005275.1 Arabidopsis thaliana BAC F4C21 from chromosome IV, top arm, near 17 cM, complete sequence. | |||
GenBank | AL161496 | 0.0 | AL161496.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 8. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_192226.1 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q9ZR14 | 0.0 | Y4317_ARATH; Putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | A0A178V0D6 | 0.0 | A0A178V0D6_ARATH; Uncharacterized protein | ||||
STRING | AT4G03170.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 | Representative plant | OGRP10517 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | AT4G03170.1 |
Entrez Gene | 828050 |
iHOP | AT4G03170 |
wikigenes | AT4G03170 |
Publications ? help Back to Top | |||
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