PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G03124

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 563aa MW: 63853.1 Da PI: 6.528

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G03124	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94	1.5e-29	53	137	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +++ +++k+plWeevs+km e+g++r++k+Ckek+en+ k++k+++e + +r++++ t++yf+qlea Ro01_G03124 53 RWPRQETLALLKIRSDMDAEFKVASAKMPLWEEVSRKMGEHGYNRNAKKCKEKFENIYKYHKRTREARDGRSAGK--TYKYFEQLEA 137 8******************************************************************986555..6*****85 PP
2	trihelix	92.3	4.8e-29	386	470	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev aLi++r++ + +++++ +k++lWee+s+ m++ g+ r++k+Ckekwen+nk+y+++k+++kkr +++s+tc+y + l+ Ro01_G03124 386 RWPREEVEALIRLRSNYDLQYQENGSKGHLWEEISASMKKLGYDRNAKRCKEKWENINKYYRRLKDSNKKR-PDDSKTCAYIKMLD 470 8*******************************************************************8.99*****99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MLDNSTLPAN PSSPTSDRRH EEVAGDGGSV SVGLEEEERA GLEQGYRNWA GNRWPRQETL 60 ALLKIRSDMD AEFKVASAKM PLWEEVSRKM GEHGYNRNAK KCKEKFENIY KYHKRTREAR 120 DGRSAGKTYK YFEQLEAIEH HHFEPPPPAE TIQTSTAETA ATSPKDGAYS AIPSSSVQHQ 180 LSSFVDNSSP TTSCSSKESE GTHKKKRRVS EFFEKLMKQV IDKQENLQTK FVEVLDKYEQ 240 DRIAREEEWK MQELARIERE RELLAQERSV AAAKDTAVLA FLQKFSEQAA SVQLPGQSCS 300 VRFPNQPSSV QLPVQACSVQ LPNQPSSVQL PGQACAVRVQ MPDNSSMSNL VTEKQKKDED 360 WNLVRRSLEK PEKNNGRSHT PISSTRWPRE EVEALIRLRS NYDLQYQENG SKGHLWEEIS 420 ASMKKLGYDR NAKRCKEKWE NINKYYRRLK DSNKKRPDDS KTCAYIKMLD ALYCKKTGKA 480 ENQVDSNYDL RPEELLMHMM AGQEEQHQPE AVTENGDSEN VEKIQGDNGS GEGEGDVAGD 540 GYRIVAANPS STEQDNPSMA IMS

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MLDNSTLPAN PSSPTSDRRH EEVAGDGGSV SVGLEEEERA GLEQGYRNWA GNRWPRQETL  60
ALLKIRSDMD AEFKVASAKM PLWEEVSRKM GEHGYNRNAK KCKEKFENIY KYHKRTREAR  120
DGRSAGKTYK YFEQLEAIEH HHFEPPPPAE TIQTSTAETA ATSPKDGAYS AIPSSSVQHQ  180
LSSFVDNSSP TTSCSSKESE GTHKKKRRVS EFFEKLMKQV IDKQENLQTK FVEVLDKYEQ  240
DRIAREEEWK MQELARIERE RELLAQERSV AAAKDTAVLA FLQKFSEQAA SVQLPGQSCS  300
VRFPNQPSSV QLPVQACSVQ LPNQPSSVQL PGQACAVRVQ MPDNSSMSNL VTEKQKKDED  360
WNLVRRSLEK PEKNNGRSHT PISSTRWPRE EVEALIRLRS NYDLQYQENG SKGHLWEEIS  420
ASMKKLGYDR NAKRCKEKWE NINKYYRRLK DSNKKRPDDS KTCAYIKMLD ALYCKKTGKA  480
ENQVDSNYDL RPEELLMHMM AGQEEQHQPE AVTENGDSEN VEKIQGDNGS GEGEGDVAGD  540
GYRIVAANPS STEQDNPSMA IMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	204	208	KKKRR
2	204	209	KKKRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-48	Trihelix family protein