PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G02931
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 311aa    MW: 34189.8 Da    PI: 8.6497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G02931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++
      Ro01_G02931  5 KQKWTSEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRN 55
                     79***********************************9***********99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MGNPKQKWTS EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMSVSG  60
LGPREKARMK PRDSPVTLFS NPQTSAAAPV KRESLAAPVK REPSAAPVKR EVAASVKGEP  120
IADDSPTEAK TEAKTAPMYN AMILEALSNS TEPNGLETGA IASFIEQRNE VPQNFRRLLS  180
SRLRRLVAQE KLEKIQNCFK IKSDSSGETK APPALKPAPK QIDAPLAPKQ NDVQPTQLQS  240
PGDVIPYETV EEAAVAAAYK IAEAENKSFV AAEAVKESER VSQMFEDTNS VLQLAEEFLK  300
KCLQGEVLLI V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-45MYB_related family protein