PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G01176
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 391aa    MW: 43714.2 Da    PI: 7.115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G01176genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-104493154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +v+ +k+L
  Ro01_G01176 44 RKVQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTVQMLKDL 93
                 5677889********************997....79****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MDQWKGDDFS GVSAPSLIQP LPFPSDCDSR KRAHVETKDP ISARKVQKAD REKLRRDRLN  60
EHFLELGNTL DPDRPKNDKA TILTDTVQML KDLTADVNKL KAECAALNDE SREITVEKNE  120
LREEKASLKS DIENLNAQYQ QRLRVMFPWG AVDPSVVMAP PYSYPMPVAV PPGSIPMHPS  180
LQPFPYYQTP NPATVPNPCP TFVSYPTPIN PPVEQPLPQP QYASVSRVSS KQDSKSKSSD  240
HQRGSNAERC DDSNDVATDL VLKMPGSSAQ QDSSCGGRKG KQSQRKDRNI TDGSSSSRYS  300
SSQVVQESSS NSVGILHLEL FKRARPRLTN EDVVCACSTY RIVLLTSQAA CVFYEASVHT  360
VVPSFFFWKL QLFDLCFPDH DRDKWTVLAL I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.16e-82bHLH family protein