PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G01153

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 360aa MW: 41100.8 Da PI: 5.0794

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G01153	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.9	2.8e-55	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL+ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ Ro01_G01153 8 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQDrcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYD- 103 69**************************.9***********953432234667**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k++l+g++ktLvfykgrap+g+k+dW+mheyrle Ro01_G01153 104 KSKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 137 999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MESIESTVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQDRCRIG 60 YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKS VYDKSKLIGM RKTLVFYKGR 120 APNGQKSDWI MHEYRLESDE NGPPQARWVV CRAFKKRTSS QNKSMEGWDS SYFYDELHGV 180 SSIVDPTDFI SRQPQRAAQS FLAAQSFLCK QEIAAEADNL NSTLMPSDHF VQLPQLESPS 240 LPLIKRPSSS MSQISSSENN VEEDVELINN KGCSSNINAK KTAAVTDWRD LDKFVASQLS 300 QEDNYNELGD HGDYSSFGVH DHDDSDMAAL LLLQRDEGNK LNGFLSSSSD CDLGICIFEK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MESIESTVPP GFRFHPTDEE LVGYYLRKKV ASQKIDLDVI RDIDLYRIEP WDLQDRCRIG  60
YEEQNEWYFF SHKDKKYPTG TRTNRATMAG FWKATGRDKS VYDKSKLIGM RKTLVFYKGR  120
APNGQKSDWI MHEYRLESDE NGPPQARWVV CRAFKKRTSS QNKSMEGWDS SYFYDELHGV  180
SSIVDPTDFI SRQPQRAAQS FLAAQSFLCK QEIAAEADNL NSTLMPSDHF VQLPQLESPS  240
LPLIKRPSSS MSQISSSENN VEEDVELINN KGCSSNINAK KTAAVTDWRD LDKFVASQLS  300
QEDNYNELGD HGDYSSFGVH DHDDSDMAAL LLLQRDEGNK LNGFLSSSSD CDLGICIFEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18060.1	1e-143	NAC family protein