PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G01001

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 509aa MW: 53580 Da PI: 8.7137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G01001	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	62	84	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Ro01_G01001 62 FVCEICNKGFQRDQNLQLHRRGH 84 89*******************88 PP
2	zf-C2H2	11.2	0.0012	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Ro01_G01001 138 WKCDKCSKKYAVQSDWKAHSKIC 160 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MPTDLDNSST ASGEASVSSS GNQTAPPPKP TTKKKRNLPG MPDPDAEVIA LSPKTLMATN 60 RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEASC VHHDPSRALG 120 DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI 180 THRAFCDALA EESARGQPQT QNVNLNSESD PKVQTVNSPP PPAPPAQVSV PSQPTPSSVP 240 SQSAALPIQS TVAELPENPP QNLEEVPAVT QRKGHCSSSN SSSSNGSTSS SVFASLFASS 300 TTSGASLQPP QPPAFTDLIR AMGQPDQPTD LAPSSSMEPI SLGLSTSHAS SIFGTAGQER 360 RQYAPPPQPA MSATALLQKA AQMGAAATNA SLLRGFGIVS SSSSSAQQES LQWNQRQAES 420 DSASIAAGLG LGLPCDGSGW KELMMGSPSM FGPKQTTLDL LGLGMAAGNT PNGGLSALIT 480 SIGGGLDVAT AAASFGSGEY SGKDMARSS

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MPTDLDNSST ASGEASVSSS GNQTAPPPKP TTKKKRNLPG MPDPDAEVIA LSPKTLMATN  60
RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSSKEVKK RVYVCPEASC VHHDPSRALG  120
DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHSKIC GTREYKCDCG TLFSRRDSFI  180
THRAFCDALA EESARGQPQT QNVNLNSESD PKVQTVNSPP PPAPPAQVSV PSQPTPSSVP  240
SQSAALPIQS TVAELPENPP QNLEEVPAVT QRKGHCSSSN SSSSNGSTSS SVFASLFASS  300
TTSGASLQPP QPPAFTDLIR AMGQPDQPTD LAPSSSMEPI SLGLSTSHAS SIFGTAGQER  360
RQYAPPPQPA MSATALLQKA AQMGAAATNA SLLRGFGIVS SSSSSAQQES LQWNQRQAES  420
DSASIAAGLG LGLPCDGSGW KELMMGSPSM FGPKQTTLDL LGLGMAAGNT PNGGLSALIT  480
SIGGGLDVAT AAASFGSGEY SGKDMARSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-108	C2H2 family protein