PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_ssc0000350.1_g000043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 508aa MW: 57400.5 Da PI: 6.6394 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.1e-20 | 19 | 74 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql +Le+++++++yp++e++ +LA++lgL+e+q++ WF+ rR k+k+ Rmu_ssc0000350.1_g000043.1 19 KKRVLKTPAQLMALEKFYNEHKYPTEEMKSQLAEELGLSEKQISGWFCHRRLKDKR 74 89****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 508 aa Download sequence |
MEESNEVHSE ENKTSFDNKK RVLKTPAQLM ALEKFYNEHK YPTEEMKSQL AEELGLSEKQ 60 ISGWFCHRRL KDKRLSRDET YANGRQDRSS GVIQDRASGL GQDSCGSTKH GDYRYVDPRE 120 VESRRLSGYD FPPADLTREH RIHYTERVSM DNTSSESSSS LQDRFLTQTE DPYDMETSRY 180 VTDNGVFSPL NTKGTENMGY KPSGYLKVKG EIENAAITAV KRQLGRYFRE DGPPLGVEFD 240 PLPPGAFESP IMDPVQEPSI GGDATGLDSP DTSGVKRQPS PSTRYEVYNS KLSSQGLYMH 300 QENRGIMHGV DMVERKSRKQ LRQKSTYLKD INSSAGKNSS LDMYDAFPGG MSAYVGNRKN 360 RMSSKHGHRG RKITSETTEP WSNESDKVCS PNISQRSDYF KSKALNSVVK HSETHDTERG 420 LFTMIPREEK VDGECKAVKD YHNPLRVTMT DEVAVGKQGR VNFPHQDYAT SVPFSQIPER 480 KNQIKGTAME MPSSFSEDET AETNSSVD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03250.1 | 4e-86 | HB-other family protein |