PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000330.1_g000016.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 280aa    MW: 32748.4 Da    PI: 8.003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000330.1_g000016.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-18651147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                rg W + Ede+l ++v+++G+++W++Ia++++ gR++k+c++rw++ 
  Rmu_ssc0000330.1_g000016.1  6 RGHWRPAEDEKLRELVERYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 51
                                899*****************************.***********996 PP
2Myb_DNA-binding54.23.3e-1758101146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 r+++++eE+e+l+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Rmu_ssc0000330.1_g000016.1  58 RNPFSEEEEERLLASHRIHGNR-WAVIARLFP-GRTDNAVKNHWHV 101
                                 789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MCSSTRGHWR PAEDEKLREL VERYGPHNWN AIAEKLQGRS GKSCRLRWFN QLDPRINRNP  60
FSEEEEERLL ASHRIHGNRW AVIARLFPGR TDNAVKNHWH VIMARRCRER SRLHHQLHAK  120
GMTRTSTNNS TPHHQVLMSS INHDELSKSS SNYKQDLQMI LNCRQETMND NSYIGNYCSA  180
TERNFHYYPA AFTHNTTLAP LIPNKDQFYP NTMHQDKNRE PIEFYDFLQV NTESNRSEVI  240
DINSRKDEEE VDQLEAIRHE QTKAAGAPFI DFFSGGSVTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-88MYB family protein