PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000289.1_g000025.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 438aa MW: 47306.1 Da PI: 6.8058

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000289.1_g000025.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.7e-10	3	51	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 +WT eEd+ + +a++++ + +W++Ia+ ++ ++ +++k ++q++ Rmu_ssc0000289.1_g000025.1 3 SWTREEDKAFENAIALHWIEddeesSWDKIASLVP-SKSMEELKRHYQML 51 7***************99***********.**********86 PP
2	Myb_DNA-binding	31.4	4.3e-10	140	188	3	47
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47 +WT eEd+ + +a++++ + +W++Ia+ ++ ++ +++k ++q++ Rmu_ssc0000289.1_g000025.1 140 SWTREEDKAFENAIALHWIEddeesSWDKIASLVP-SKSMEELKRHYQML 188 6***************99***********.**********86 PP
3	Myb_DNA-binding	38.2	3.4e-12	270	314	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Rmu_ssc0000289.1_g000025.1 270 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 314 7***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MSSWTREEDK AFENAIALHW IEDDEESSWD KIASLVPSKS MEELKRHYQM LVEDVSAIVS 60 GNIPVPNYGG EEATTSVSKE SSSARASSSG VSDKRLSSGH GNGGGFSPLG HDSSGHGSKG 120 GSRSDQERKK GIPWTEEEHS WTREEDKAFE NAIALHWIED DEESSWDKIA SLVPSKSMEE 180 LKRHYQMLVE DVSAIVSGNI PVPNYGGEEA TTSVSKESSS ARASSSGVSD KRLSSGHGNG 240 GGFSPLGHDS SGHGSKGGSR SDQERKKGIP WTEEEHRLFL LGLDKFGKGD WRSISRNFVI 300 SRTPTQVASH AQKYFIRLNS MNRDRRRSSI HDITSVNNGG DVPSHQAPIT GQQSNAYAPS 360 AAAIGPPSVK HRPHQPHMAG LGMYGAPMGH PVSAPPGHMA SAVGTPVMLP PGHHPHHAHP 420 PPYVVPVAYP MAHPTMHQ

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MSSWTREEDK AFENAIALHW IEDDEESSWD KIASLVPSKS MEELKRHYQM LVEDVSAIVS  60
GNIPVPNYGG EEATTSVSKE SSSARASSSG VSDKRLSSGH GNGGGFSPLG HDSSGHGSKG  120
GSRSDQERKK GIPWTEEEHS WTREEDKAFE NAIALHWIED DEESSWDKIA SLVPSKSMEE  180
LKRHYQMLVE DVSAIVSGNI PVPNYGGEEA TTSVSKESSS ARASSSGVSD KRLSSGHGNG  240
GGFSPLGHDS SGHGSKGGSR SDQERKKGIP WTEEEHRLFL LGLDKFGKGD WRSISRNFVI  300
SRTPTQVASH AQKYFIRLNS MNRDRRRSSI HDITSVNNGG DVPSHQAPIT GQQSNAYAPS  360
AAAIGPPSVK HRPHQPHMAG LGMYGAPMGH PVSAPPGHMA SAVGTPVMLP PGHHPHHAHP  420
PPYVVPVAYP MAHPTMHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	6e-74	MYB family protein