PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_ssc0000240.1_g000012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | FAR1 | ||||||||
Protein Properties | Length: 88aa MW: 10081.5 Da PI: 6.4547 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.6 | 3.6e-12 | 27 | 88 | 2 | 66 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 Y+eY+ ++ Fsvr+ +++k+ ++ +++ +++Cskeg++ +++ + e ++ r rtgC ak+ Rmu_ssc0000240.1_g000012.1 27 LYCEYGARMEFSVRIMRKRKT--SNVVKQVNYCCSKEGFKLDSDPS-EVKKADRLDIRTGCIAKI 88 7***************98888..8889***************9999.99999*********9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence |
MIVNCQASND DELYGVIVNS EEEAYNLYCE YGARMEFSVR IMRKRKTSNV VKQVNYCCSK 60 EGFKLDSDPS EVKKADRLDI RTGCIAKI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | MRKRKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 2e-06 | FAR1 family protein |