PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000160.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SRS
Protein Properties Length: 341aa    MW: 36778.1 Da    PI: 7.3653
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000160.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.93.8e-701142643153
                      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk..q 83 
                                 sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a++++++++++ + +kr+r++++     
  Rmu_ssc0000160.1_g000001.1 114 SGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQQQQQQQQLQFPKRQRDNQAGGagG 196
                                 7899*************************************************************999999999996655015 PP

                      DUF702  84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 s+l++ ++++++  + le + +P+evss+a+frcvrvs++dd ee++aYqtav+igGhvfkG+LydqGl+
  Rmu_ssc0000160.1_g000001.1 197 SSLACVRIPTNT--SGLELAPFPAEVSSPALFRCVRVSAMDDVEEQYAYQTAVNIGGHVFKGLLYDQGLD 264
                                 666667766665..5689999***********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MAGFFGNLGG RDQGPRNKQD GDDERGGNLN LFSYGNEEIY NNKGGFELWP QYHPHHPHHH  60
QQSLNYYAFG VDPSRNNNHN NLEGNVSDDS SSGLRLTVMR QGSGGGGGGS GLGSGGMNCQ  120
DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQEQFSAL QQQQQQQQQL  180
QFPKRQRDNQ AGGAGGSSLA CVRIPTNTSG LELAPFPAEV SSPALFRCVR VSAMDDVEEQ  240
YAYQTAVNIG GHVFKGLLYD QGLDGHYTSA TTAGDSSSGQ QDGGGGGGHH HNNQQQLNLI  300
NTTTSTSANP PTATLLDPTV VFPTPLNAFV AGTQYFPPPR S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-74SRS family protein