PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G75520.1
Common NameF1B16.17, SRS5
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 346aa    MW: 38554 Da    PI: 7.1644
Description SHI-related sequence 5
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G75520.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.93.9e-701192862155
       DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........kskkqsalss 88 
                  r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++kr re            +    sal++
  AT1G75520.1 119 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREAsggdnnddkdhSGGGGSALAN 216
                  7899**********************************************************999977777777766666666666557778899*** PP

       DUF702  89 tklssaeskkeletss.lPeevsseavfrcvrvssvdd.geee.laYqtavsigGhvfkGiLydqGleek 155
                  t++++a+s++ le+s+ lP+ev+s+a+frcvrvss+++ ++++ +aYqtav+igGh+fkGiLydqG+e++
  AT1G75520.1 217 TRVVNANSNSGLEVSQhLPPEVNSPAIFRCVRVSSIEEdEDDQaYAYQTAVNIGGHIFKGILYDQGPEHQ 286
                  ***********998876*******************984444479**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051428.9E-63122284IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28124166IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.4E-25233283IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009851Biological Processauxin biosynthetic process
GO:0048467Biological Processgynoecium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000014anatomyrosette leaf
PO:0000037anatomyshoot apex
PO:0005660anatomyhydathode
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0009073anatomystigma
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFFYLGGR DNNSNNNKQD HHQVDKDHHH QDKSNYLYLY KDEIYNNNKG FEIWPPQYFQ  60
QQEHQQQQQQ QQHASAPANF YSFGMVPSGS SSNNNNNRSR SLYFNVVSDH EPGGFTVTRQ  120
GGMNCQDCGN QAKKDCPHMR CRTCCKSRGF HCQTHVKSTW VPAAKRRERL AQLASLQHHS  180
ASSRETQNAK RLREASGGDN NDDKDHSGGG GSALANTRVV NANSNSGLEV SQHLPPEVNS  240
PAIFRCVRVS SIEEDEDDQA YAYQTAVNIG GHIFKGILYD QGPEHQDNHH LNLLASTATT  300
TNVEETATKT VTGNNNNGLM LDPSSLYPAQ LNSFIAGTPF FTPPRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.500380.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible262976_at0.0
Expression AtlasAT1G75520-
AtGenExpressAT1G75520-
ATTED-IIAT1G75520-
Functional Description ? help Back to Top
Source Description
TAIRA member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G75520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Disruption Phenotype ? help Back to Top
Source Description
UniProtDISRUPTION PHENOTYPE: No visible phenotype. {ECO:0000269|PubMed:16740146}.
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G75520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177684.10.0SHI-related sequence 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A178W9B50.0A0A178W9B5_ARATH; SRS5
STRINGAT1G75520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Representative plantOGRP18721140
Publications ? help Back to Top
  1. Fridborg I,Kuusk S,Robertson M,Sundberg E
    The Arabidopsis protein SHI represses gibberellin responses in Arabidopsis and barley.
    Plant Physiol., 2001. 127(3): p. 937-48
    [PMID:11706176]
  2. Kuusk S,Sohlberg JJ,Long JA,Fridborg I,Sundberg E
    STY1 and STY2 promote the formation of apical tissues during Arabidopsis gynoecium development.
    Development, 2002. 129(20): p. 4707-17
    [PMID:12361963]
  3. Jiao Y, et al.
    A genome-wide analysis of blue-light regulation of Arabidopsis transcription factor gene expression during seedling development.
    Plant Physiol., 2003. 133(4): p. 1480-93
    [PMID:14605227]
  4. Xiao YL, et al.
    Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.
    Plant Physiol., 2005. 139(3): p. 1323-37
    [PMID:16244158]
  5. Kuusk S,Sohlberg JJ,Magnus Eklund D,Sundberg E
    Functionally redundant SHI family genes regulate Arabidopsis gynoecium development in a dose-dependent manner.
    Plant J., 2006. 47(1): p. 99-111
    [PMID:16740146]
  6. Eklund DM, et al.
    Expression of Arabidopsis SHORT INTERNODES/STYLISH family genes in auxin biosynthesis zones of aerial organs is dependent on a GCC box-like regulatory element.
    Plant Physiol., 2011. 157(4): p. 2069-80
    [PMID:21976484]
  7. Baylis T,Cierlik I,Sundberg E,Mattsson J
    SHORT INTERNODES/STYLISH genes, regulators of auxin biosynthesis, are involved in leaf vein development in Arabidopsis thaliana.
    New Phytol., 2013. 197(3): p. 737-50
    [PMID:23293954]
  8. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]