PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000127.1_g000054.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 622aa MW: 68029.6 Da PI: 7.667

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000127.1_g000054.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.2	1.7e-33	276	333	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Rmu_ssc0000127.1_g000054.1 276 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 333 8**************************************.*************85 PP
2	WRKY	105.4	3e-33	451	509	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+ Rmu_ssc0000127.1_g000054.1 451 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 509 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 622 aa Download sequence
MASSSGSLDT SANSHPSNFT FSTHPFMTTS FSDLLSSGAD TTNPIATATR NSGYGLSDRI 60 AERTGSGVPK FKSLPPPQLP ISPPSVVSPS SYFAIPPGMS PAELLDSPVL LSSSNILPSP 120 TTGSFAAQAI NWRTNSGSGA NNNNNNRSVK EEHKNYSDFS FQTQTRAPPT SSSAIFQSSN 180 SSIQTAQEQA WNNYLGPPKQ DNFSSGKSMV KPEYGSSVQS FSSEMGTNMQ SNNNAQPNSS 240 GGFQSDQYSN YNNNNNNNNS NNNQLQSHQC LNRRSDDGFN WRKYGQKQVK GSENPRSYYK 300 CTYPNCPTKK KVERSLDGQI TEIVYKGNHN HPKPQNTRRS GSSAASSHAI QASNHTTNDI 360 PDQSFGSHGN SQMDNSIGTP ENSSNFSNGD DEFDQSSQRS KSGGGDEYDE DEPNAKRWKK 420 EGDNECISAP GSRTVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTNP 480 GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGSAN RPLPSHNTNN NHNVPTAMRP 540 MTHHSTNNAA NNNPLDNLRL PTSEGQAPFT LEMLQSPASY GFAGFDNPMG SYMNQTQLND 600 NNIFSKTKDE PRDDAFFESL LC

Sequence ? help Back to Top

Protein Sequence Length: 622 aa Download sequence

MASSSGSLDT SANSHPSNFT FSTHPFMTTS FSDLLSSGAD TTNPIATATR NSGYGLSDRI  60
AERTGSGVPK FKSLPPPQLP ISPPSVVSPS SYFAIPPGMS PAELLDSPVL LSSSNILPSP  120
TTGSFAAQAI NWRTNSGSGA NNNNNNRSVK EEHKNYSDFS FQTQTRAPPT SSSAIFQSSN  180
SSIQTAQEQA WNNYLGPPKQ DNFSSGKSMV KPEYGSSVQS FSSEMGTNMQ SNNNAQPNSS  240
GGFQSDQYSN YNNNNNNNNS NNNQLQSHQC LNRRSDDGFN WRKYGQKQVK GSENPRSYYK  300
CTYPNCPTKK KVERSLDGQI TEIVYKGNHN HPKPQNTRRS GSSAASSHAI QASNHTTNDI  360
PDQSFGSHGN SQMDNSIGTP ENSSNFSNGD DEFDQSSQRS KSGGGDEYDE DEPNAKRWKK  420
EGDNECISAP GSRTVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTNP  480
GCPVRKHVER ASHDLRAVIT TYEGKHNHDV PAARGSGSAN RPLPSHNTNN NHNVPTAMRP  540
MTHHSTNNAA NNNPLDNLRL PTSEGQAPFT LEMLQSPASY GFAGFDNPMG SYMNQTQLND  600
NNIFSKTKDE PRDDAFFESL LC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-108	WRKY family protein