PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0041020.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 843aa MW: 92719.4 Da PI: 6.3596 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.2e-18 | 28 | 86 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L + + +++ +q+kvWFqNrR +ek+ Rmu_sc0041020.1_g000002.1 28 KYVRYTSEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 86 56789****************************************************97 PP | |||||||
2 | START | 163.3 | 1.8e-51 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ Rmu_sc0041020.1_g000002.1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMF 247 7899******************************************************.7777777777***********9999 PP CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS START 86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163 g g+++l++++++a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s Rmu_sc0041020.1_g000002.1 248 PAGngGTIELIYTQTYAPTTLAPaRDFWTLRYTTTLDNGSFVVCERSLSGSGAGPNgasAAQFVRAEMLPSGYLIRPCEGGGSI 331 99999********************************************999999989999*********************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 +++v+h +l++++++++lr+l++s+ + ++k++ a+l++ + Rmu_sc0041020.1_g000002.1 332 IHIVDHLNLEAWSVPEVLRPLYESSKVVAQKRTIAALRYIR 372 ************************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 843 aa Download sequence |
MAMAVAHHQH RESSSGSSIN KHLNDSGKYV RYTSEQVEAL ERVYAECPKP SSLRRQQLIR 60 DCPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE NDRLQKQVSQ 120 LVCENGYMRQ QLHTVPATDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT 180 AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRS 240 LEVFTMFPAG NGGTIELIYT QTYAPTTLAP ARDFWTLRYT TTLDNGSFVV CERSLSGSGA 300 GPNGASAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVVA 360 QKRTIAALRY IRQIAQETSG EVVYSFGRQP AVLRTFSQRL IRGFNDAVNG FNDDGWSLIN 420 CDGAEDIIMA VNSTKNLTTT NPANSFAFLG GILCAKASML LQNVPPAVLV RFLREHRSEW 480 ADFNVDAYSA ASLKSGSYAY PGMRPTRFTG GQIIMPLGHT IEHEELLEVV RLEGHSFSQE 540 EAFASRDIHL LQICSGVDEN AVGACSELVF APIDEMFPDD APLLPSGFRI IPLESKTSDS 600 NDAMATHRTL DLTSSLEVGS TTNHNAGDLN SFHNARSVLT IAFQFPFENS LQDNVASMAR 660 QYVRNVISSV QRVAMAISPS GLSPSVGPKL SPSSPEALTL ANWICQSYSY HIGAELLQPD 720 SLVGDSMLKH LWHHQDAILC CSLKSLPVFI FANQAGLDML ETTLVALQDI SLDKIFDECG 780 RKTLCADFAK LMQQGFAYLP AGICMSTMGR HISYEQAIGW KVLSGEDNSV HCLAFSFVNW 840 SFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |