PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0040156.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 531aa MW: 59422.9 Da PI: 8.5654

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0040156.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.3e-06	90	113	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k lC f+ + G+C G +CkF+H+ Rmu_sc0040156.1_g000001.1 90 KSILCEFYKA-GQCAKGFKCKFSHD 113 66797777.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPKPD LSKTAAKKKK 60 EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG 120 EKIDLYSDKR QNETMEEWDQ ETLEKVVESK RKEYNINKPT DIVCKYFLEA VEKKQYGWFW 180 VCPNGGKDCH YRHALPPGYI LKSQMKALLE EETEKIPIEE EIEDQRAKLK TSTPMTPELF 240 MQWKKKKIAE RDAGLASKMA ERAKNDRMSG RELFLSDSTL FVDDAEASEK YQREKESEVA 300 EKKVCNNANG GGPHVADGDT KATNIDDSVE DDDLDINELN ELEASLSKNH DTDLSYIVDM 360 VLGSESYSFT MQSALENGVV RRASLGRPAK NDQSSSSLTS ASSSPAHQTQ SSSSLAQNLP 420 DRFRFCPQPK VTYSDRSPAS SSAKDRRRSS CPDRVHHCFT QTGLISPDSL RLPPVPTISL 480 SSWSSSCSAR LQFLINSNPV QIAPPTQTAV AIPHSSRPDS SVGSPSPTRS T

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPKPD LSKTAAKKKK  60
EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDLYSDKR QNETMEEWDQ ETLEKVVESK RKEYNINKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKDCH YRHALPPGYI LKSQMKALLE EETEKIPIEE EIEDQRAKLK TSTPMTPELF  240
MQWKKKKIAE RDAGLASKMA ERAKNDRMSG RELFLSDSTL FVDDAEASEK YQREKESEVA  300
EKKVCNNANG GGPHVADGDT KATNIDDSVE DDDLDINELN ELEASLSKNH DTDLSYIVDM  360
VLGSESYSFT MQSALENGVV RRASLGRPAK NDQSSSSLTS ASSSPAHQTQ SSSSLAQNLP  420
DRFRFCPQPK VTYSDRSPAS SSAKDRRRSS CPDRVHHCFT QTGLISPDSL RLPPVPTISL  480
SSWSSSCSAR LQFLINSNPV QIAPPTQTAV AIPHSSRPDS SVGSPSPTRS T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20280.1	1e-158	C3H family protein