PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0032155.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 656aa    MW: 75137.5 Da    PI: 6.4065
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0032155.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.55.9e-1112856543374
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lL++cA+av+s d++ a++ L+ +++++sp+gd +qRla+yf+++L++rl      ly+ ++  + + ++ ++ l+a++++ +
  Rmu_sc0032155.1_g000001.1 285 TLLTQCAKAVASYDTRTANEQLKLIRQHSSPHGDGTQRLAHYFANGLEERLIA-AVPLYNPVSLFSYK-MSAADILKAYQTYIK 366
                                79**************************************************9.77899888887776.789************ PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                ++P+  +s++ aN++I + +e+ +r+HiiDf+i +G +Wp+L+q La+Rp+gpp+l iTg++ p+sg   + +leetg+rLak+
  Rmu_sc0032155.1_g000001.1 367 ACPFKLMSNIYANKTIFKLAEKVTRLHIIDFGILYGYKWPSLIQMLAKRPSGPPMLHITGIEFPQSGfrPSGRLEETGNRLAKY 450
                                ******************************************************************9*9*************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                +++++vpfe+n+ +a++++++++e+++++++E ++Vn+ ++l++l+de+v ++s+rd+vLkl+++++P+++++   +  +n++ 
  Rmu_sc0032155.1_g000001.1 451 CKRFNVPFEYNF-IAQSWDTIQYEDIKLDRDELTVVNCLYRLKNLHDETV-INSPRDTVLKLIRRINPDIFIHGVVNGAYNAPF 532
                                ************.7*******************************96655.6667***************************** PP

                       GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                F  rf eal+y+s+lfd +e++lpre+++r  +E+e++gr+i nv+aceg++r er et+++W+ r ++aGFk++pl+++++k+
  Rmu_sc0032155.1_g000001.1 533 FNIRFREALYYFSSLFDVFEETLPREDQQRLLYEQEIFGRDIINVIACEGSRRLERPETYKQWQIRNTRAGFKQLPLNQEIVKK 616
                                ************************************************************************************ PP

                       GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                +k ++r  + + + v+++ ++l++gWk+r + ++++W+
  Rmu_sc0032155.1_g000001.1 617 VKNIVRLDYHEDFVVDKDGKWLLQGWKGRIIHAICCWK 654
                                *********999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    
MPTSGQNILV TESDQHNHEF SDPSFFPSNP NPPSRDDSSS SLGLSSEGEY YSPSIATLQY  60
ISQMLMEEDL QNKPCMLQDC LALQATEKSL HDVLVQQYPS STNHLLTSST QQNVEISDDF  120
INHSSNSSTA ARNWDDGSGW ISLQNVLESF PVENTTLSVP NPFSSNGKSE IIDQERDSSF  180
LIQPRELTED GNDSTNRSRS KKDRQWEDGD YQEQGRSNKQ TALYAAESEP PEMLDQVLLY  240
QYQNSGSSLQ ESDQLKTRSG FRGLKGKRTG KKKMDDNGAV VDFQTLLTQC AKAVASYDTR  300
TANEQLKLIR QHSSPHGDGT QRLAHYFANG LEERLIAAVP LYNPVSLFSY KMSAADILKA  360
YQTYIKACPF KLMSNIYANK TIFKLAEKVT RLHIIDFGIL YGYKWPSLIQ MLAKRPSGPP  420
MLHITGIEFP QSGFRPSGRL EETGNRLAKY CKRFNVPFEY NFIAQSWDTI QYEDIKLDRD  480
ELTVVNCLYR LKNLHDETVI NSPRDTVLKL IRRINPDIFI HGVVNGAYNA PFFNIRFREA  540
LYYFSSLFDV FEETLPREDQ QRLLYEQEIF GRDIINVIAC EGSRRLERPE TYKQWQIRNT  600
RAGFKQLPLN QEIVKKVKNI VRLDYHEDFV VDKDGKWLLQ GWKGRIIHAI CCWKSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-169GRAS family protein