PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G29060.1 | ||||||||
Common Name | SCL33, T9I4.14 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GRAS | ||||||||
Protein Properties | Length: 694aa MW: 78101.3 Da PI: 5.8885 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 363.9 | 2.2e-111 | 318 | 691 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++ L++cA+avs +d + a++lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts +s+ l+a++++ v+P+ k++ + a AT2G29060.1 318 LRTMLVSCAQAVSINDRRTADELLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---TSDMLKAYQTYISVCPFKKIAIIFA 412 5789**************************************************************9999...89*********************** PP GRAS 99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192 N+ I++ ++++ +++HiiDf+is G+QWp+L++ La R++++ +lRiTg++ p+ g +e + etg+rLak+++++++pfe+n+ +a+++e+++le AT2G29060.1 413 NHSIMRLASSAnaKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGRRLAKYCQKFNIPFEYNA-IAQKWESIKLE 509 ****99988776799****************************************99*****************************.7********** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 +L++k+gE +aVn+ ++ +llde+v+++s+rd+vLkl+++++P+v++ ++n++ F++rf e l +ys+lfd+ +++l re+ r++ E+e+ AT2G29060.1 510 DLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFY 607 ************************************************************************************************** PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kl+++ + +++ v+++ ++l++gWk+r ++ S W AT2G29060.1 608 GREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLMVESGYkPKEFDVDQDCHWLLQGWKGRIVYGSSIW 691 ***************************************************99887899************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.689 | 292 | 671 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-109 | 318 | 691 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006397 | Biological Process | mRNA processing | ||||
GO:0008380 | Biological Process | RNA splicing | ||||
GO:0005681 | Cellular Component | spliceosomal complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 694 aa Download sequence Send to blast |
MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV 60 LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK YPVDDSDQPL TTTTSLAQLV 120 SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG 180 SSFSGDLVSN MFNDTDLALQ FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH 240 LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK 300 GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH 360 YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS VCPFKKIAII FANHSIMRLA 420 SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG 480 RRLAKYCQKF NIPFEYNAIA QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP 540 RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV 600 MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES 660 GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-47 | 322 | 691 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334184547 | 0.0 | ||||
Expression Atlas | AT2G29060 | - | ||||
AtGenExpress | AT2G29060 | - | ||||
ATTED-II | AT2G29060 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G29060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G29060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005315 | 0.0 | AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180470.2 | 0.0 | GRAS family transcription factor | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A178W0V9 | 0.0 | A0A178W0V9_ARATH; Uncharacterized protein | ||||
STRING | AT2G29060.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 | Representative plant | OGRP266 | 15 | 129 |
Link Out ? help Back to Top | |
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Phytozome | AT2G29060.1 |
Entrez Gene | 817454 |
iHOP | AT2G29060 |
wikigenes | AT2G29060 |
Publications ? help Back to Top | |||
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