PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0028417.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 594aa MW: 65987.3 Da PI: 7.465

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0028417.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.00011	380	429	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + rE++ R+++N+ f L + l + ++ Ka+iL +A++ +k+L Rmu_sc0028417.1_g000001.1 380 KRIHKAVREKQKREHLNDLFLDLSDALELN----QQNTGKATILCEATRLLKDL 429 6888899******************998....68899*******999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MAGDLDEKGP LFLNHGHTSQ SLSLSDIFTV KDDGSVAPVL KAANPPVRAN VLYLSTQYSV 60 RISEVLKPIL DPYFDKFIWF QNSSLYHFSM FHASHHISPV PATQDEIEAE AAAVRAVVEG 120 LCPLKIVLDR VVLTSTGVLL GCWQVMSGSD PMTVRAKLRT ALPRAPEKQL YDVAILHTSF 180 ARLLGEPKAS SMVLSSTLDQ IHFFHELVDR INKELQGFEA VVTELWYVEE FDVLALALNG 240 RMKGSVRWVD GRKRCGGRKR CGGGGLGAAT RFRVGGSVSL VGDGLKDFRS DFWPYGFGIV 300 MRCRIHTGSI WFRWWSVNGR VVMVSDTQFE FALPSSILIS RLLGIMGSKD PAPVVDKVNE 360 ATQPVDRVCP GKKIQGKMPK RIHKAVREKQ KREHLNDLFL DLSDALELNQ QNTGKATILC 420 EATRLLKDLL GQIESLRNEN VSLLSESNYM TVEKNELRED TSALETQIER LQSELQERVR 480 QSKPDLNVPP VEVRQEVASH FPGNCVGFPA QESALQQAPA VFVMPLHPDL QTYPPADSAH 540 LTSKTNSNVS KPHPRYPTSV DSWPFQLLSE QPAAGKDSRQ NGHSTSGYNG HDNM

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MAGDLDEKGP LFLNHGHTSQ SLSLSDIFTV KDDGSVAPVL KAANPPVRAN VLYLSTQYSV  60
RISEVLKPIL DPYFDKFIWF QNSSLYHFSM FHASHHISPV PATQDEIEAE AAAVRAVVEG  120
LCPLKIVLDR VVLTSTGVLL GCWQVMSGSD PMTVRAKLRT ALPRAPEKQL YDVAILHTSF  180
ARLLGEPKAS SMVLSSTLDQ IHFFHELVDR INKELQGFEA VVTELWYVEE FDVLALALNG  240
RMKGSVRWVD GRKRCGGRKR CGGGGLGAAT RFRVGGSVSL VGDGLKDFRS DFWPYGFGIV  300
MRCRIHTGSI WFRWWSVNGR VVMVSDTQFE FALPSSILIS RLLGIMGSKD PAPVVDKVNE  360
ATQPVDRVCP GKKIQGKMPK RIHKAVREKQ KREHLNDLFL DLSDALELNQ QNTGKATILC  420
EATRLLKDLL GQIESLRNEN VSLLSESNYM TVEKNELRED TSALETQIER LQSELQERVR  480
QSKPDLNVPP VEVRQEVASH FPGNCVGFPA QESALQQAPA VFVMPLHPDL QTYPPADSAH  540
LTSKTNSNVS KPHPRYPTSV DSWPFQLLSE QPAAGKDSRQ NGHSTSGYNG HDNM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	264	GGRKRCGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	1e-65	bHLH family protein