PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0022726.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 420aa MW: 47655.5 Da PI: 9.8173

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0022726.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.1e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m+ ++R +k+c +rw +yl Rmu_sc0022726.1_g000008.1 4 RQRWRPEEDALLRAYVKQYGPREWNLVSQRMNtpLNRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	37.6	4.9e-12	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Rmu_sc0022726.1_g000008.1 59 KGSLTEEEQRLVICLQEKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MKERQRWRPE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV ICLQEKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKNNKTVVQP 120 IEEGKYDRIL ETFAEKLVKE RPAPAYLMAT SKGAFLHNEV SPAPSMLPPW LSNSNVTSHV 180 RPPSPSVTLS LSPTVAPSRA SPPIPWLQPD RGPENSSFVL SNLPPPGSVP CGENFVISEL 240 VECSRELEEV HHAWAAHKKE ASWRLRRVEL QLESEKACRK REKMDEIEAK VKALREEQKA 300 ALDRIEAEYR EQIAGLRRDA ELKEQKLADQ WSAKHMRLTK FLEQMGGRPR LAEPNGRGQG 360 STKPVCSWVE SPASGLQRCP EPAVAGVVAA HKPATPTSFD LDRCLEAVWD ASGVRPASLA

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MKERQRWRPE EDALLRAYVK QYGPREWNLV SQRMNTPLNR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV ICLQEKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKNNKTVVQP  120
IEEGKYDRIL ETFAEKLVKE RPAPAYLMAT SKGAFLHNEV SPAPSMLPPW LSNSNVTSHV  180
RPPSPSVTLS LSPTVAPSRA SPPIPWLQPD RGPENSSFVL SNLPPPGSVP CGENFVISEL  240
VECSRELEEV HHAWAAHKKE ASWRLRRVEL QLESEKACRK REKMDEIEAK VKALREEQKA  300
ALDRIEAEYR EQIAGLRRDA ELKEQKLADQ WSAKHMRLTK FLEQMGGRPR LAEPNGRGQG  360
STKPVCSWVE SPASGLQRCP EPAVAGVVAA HKPATPTSFD LDRCLEAVWD ASGVRPASLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-145	MYB family protein