PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0022189.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 456aa MW: 51448.7 Da PI: 6.2517 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.9 | 4.2e-21 | 126 | 223 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt++ v++Li ++ ++++ + +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++ Rmu_sc0022189.1_g000004.1 126 KWTDRVVRLLISVVACVDDDGTVEGggeglkrksavlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGt 209 7**************8877777532345666777888**********************************************5 PP trihelix 72 tsessstcpyfdql 85 +++++++ + d++ Rmu_sc0022189.1_g000004.1 210 SCRVVENPTLMDSM 223 69999988888877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence |
MDGSGLGGGF LSGPSGGTLD LESAIPRHQE KQLGLPGLAH HQHHGIVMSG VGVGVDHRPV 60 GLAEVKGSIP RGASMNVVKG KAVAPFNTNN AYNLSEEDEP SYTEDGNGEN VEGAKGKKGS 120 TWQRMKWTDR VVRLLISVVA CVDDDGTVEG GGEGLKRKSA VLQKKGKWKT VSKIMIGKGC 180 HVSPQQCEDK FNDLNKRYKR LNDILGRGTS CRVVENPTLM DSMPHLSAKA KDDVRKILSS 240 KQLFYKEMCA YHNGQWIPGC HDLDLKGHPL PPGRCSTDNN VSEEEGAEEH HDTEDDELDD 300 EDNNADGIDR DRMGRMGDRT RSSEEDDHFW QQVSLDSFEV EMAEVLQDPT KSLWERREWI 360 KKQKLQLQQQ RVSCEAEALE LEKQRYKWLR YRSKKDRELE RLRLENERMR LENDKRVLQL 420 RQKELEIDVR LSEASLEPSV GIDRLLGRDL DLGRHQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 7e-66 | Trihelix family protein |