PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0020869.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 489aa MW: 53644.4 Da PI: 4.9519

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0020869.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.3e-31	245	302	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-.-SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege.Hnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers d++++ei+Y+g Hnh Rmu_sc0020869.1_g000002.1 245 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSF-DGQITEIIYKGApHNHA 302 7**************************************.********9669996 PP
2	WRKY	35.5	2e-11	463	484	1	22
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vkg+++pr Rmu_sc0020869.1_g000002.1 463 LDDGYRWRKYGQKVVKGNPNPR 484 59*******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MEQASDVVVA ENKAKYGGGG GSVSIAERRA AKCGFNAERI NTARFRRTNT SPLPSPVERS 60 PCHLTIPPGI SPTALLDSPM MLPNSQALPS PTTGTFPLLP PSDDSSMLKS ATNEDVRRGS 120 GFDSSFMLKS QGDPKYLPGY SGFENQGSNV DYQALVLEQQ PMDFDFPMEF PEEVNAKHYA 180 VDPSNDVKNL NSVVMNESCV DLQMPHSSLA SFPKEVIHGE DVGTHQLLEG DHRGYPSLGM 240 ARNSEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSFDGQIT EIIYKGAPHN 300 HAQPQPNRRA AASLGSAFSF DEMSEMGEGN RTSVKVDSDS LWAKIQSGED IKSGYDGRPD 360 GLERTSSASV VTDLSDPLSA TQGKSPGIFE SVDTPEFSST LASVDEDDQA TLRSISLGED 420 ADNEESDSKR RKKDSCMIET SIASRAVREP RVVVQIESEI DILDDGYRWR KYGQKVVKGN 480 PNPRYAIAD

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MEQASDVVVA ENKAKYGGGG GSVSIAERRA AKCGFNAERI NTARFRRTNT SPLPSPVERS  60
PCHLTIPPGI SPTALLDSPM MLPNSQALPS PTTGTFPLLP PSDDSSMLKS ATNEDVRRGS  120
GFDSSFMLKS QGDPKYLPGY SGFENQGSNV DYQALVLEQQ PMDFDFPMEF PEEVNAKHYA  180
VDPSNDVKNL NSVVMNESCV DLQMPHSSLA SFPKEVIHGE DVGTHQLLEG DHRGYPSLGM  240
ARNSEDGYNW RKYGQKQVKG SEYPRSYYKC THPNCQVKKK VERSFDGQIT EIIYKGAPHN  300
HAQPQPNRRA AASLGSAFSF DEMSEMGEGN RTSVKVDSDS LWAKIQSGED IKSGYDGRPD  360
GLERTSSASV VTDLSDPLSA TQGKSPGIFE SVDTPEFSST LASVDEDDQA TLRSISLGED  420
ADNEESDSKR RKKDSCMIET SIASRAVREP RVVVQIESEI DILDDGYRWR KYGQKVVKGN  480
PNPRYAIAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	6e-79	WRKY family protein