PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0018468.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | YABBY | ||||||||
Protein Properties | Length: 220aa MW: 24443.9 Da PI: 8.3941 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 247.3 | 2.9e-76 | 15 | 183 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkee..lleelkveeenl 82 d+ s s+q+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhC++llsvn++ + a + hl++s+ + llee +++ +n+ Rmu_sc0018468.1_g000001.1 15 DHLSPSDQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCSNLLSVNMRGLLlPAAANQRHLGHSFFTPqnLLEEIRNAPSNT 98 78899*******************************************999872456667899999876534777777777777 PP YABBY 83 ksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 sn+ + +++ +++ ee+p++pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ Rmu_sc0018468.1_g000001.1 99 FSNQPNMMMNESFMPM----IRGVEEIPKPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPH 178 7666555554444444....568899***99989************************************************** PP YABBY 166 ihfgl 170 ihfgl Rmu_sc0018468.1_g000001.1 179 IHFGL 183 ***97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MSAAASSNTV FSSPDHLSPS DQLCYVHCNF CDTVLAVSVP CSSLFKTVTV RCGHCSNLLS 60 VNMRGLLLPA AANQRHLGHS FFTPQNLLEE IRNAPSNTFS NQPNMMMNES FMPMIRGVEE 120 IPKPPPVVNR PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNWAHFPHIH 180 FGLMPDQPVK KANIRQDGED MLIKDNGFFS APANLGVSPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-85 | YABBY family protein |