PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0016854.1_g000006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 469aa MW: 52482.9 Da PI: 8.6098 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53 | 7.8e-17 | 56 | 100 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+ Ed+llv++v+++ g +Wk Ia+ ++ gR++ qc +rwqk+l Rmu_sc0016854.1_g000006.1 56 CWTEKEDKLLVELVRKFNGSNWKQIAAGIP-GRSDVQCLHRWQKVL 100 6*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.8 | 5.8e-19 | 106 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ ++++v+++G ++W+ Ia+ ++ gR +kqc++rw+++l Rmu_sc0016854.1_g000006.1 106 KGYWTKEEDDCIIKLVEKYGARRWSVIAKFLP-GRIGKQCRERWYNHL 152 689*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.4 | 2.5e-16 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l+ +++q+G++ W+ Ia+ ++ gRt++ +k++w+ Rmu_sc0016854.1_g000006.1 158 KDAWTEEEERILAFYHQQYGNK-WAEIASFLP-GRTDNAIKNYWN 200 679*******************.*********.***********7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence |
MVKVKRELIE EAVVHSDRKF GGVSWPLSEG NCDSPVSEPS PLTWRTSGPT RRSSRCWTEK 60 EDKLLVELVR KFNGSNWKQI AAGIPGRSDV QCLHRWQKVL NPEIIKGYWT KEEDDCIIKL 120 VEKYGARRWS VIAKFLPGRI GKQCRERWYN HLSPAINKDA WTEEEERILA FYHQQYGNKW 180 AEIASFLPGR TDNAIKNYWN GAFKRKEDSY SPNSNEWDMH PDICIDELGS DLVGVKTVRQ 240 KFDNACSTEW TLGRSYGSEG KSVKSQKCMS SKTGPSGLIN LHTTAESDYS IVATPLGVKS 300 GSCKQIADHT GEYRPFPNSP LVFMDSSPST NSNCTPPKIP LCYSTPTNSV QNVYASSTSP 360 KSRLKSLART FKNTPSIIRK RASRTADHAN FSGASCSTAL NILSLDEAAF NSRDSNSSDY 420 VRGLSSMRHR PETSDAYKSL GRCLEHEFDD ENDSGIANCG KVVSAYVGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 5e-76 | MYB family protein |