PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0016175.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 418aa MW: 48793.7 Da PI: 9.6949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0016175.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.1	3.1e-23	34	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+YAke+GFs+r ++s +sk++++ +++++vC+k+g ++ e +k r+r ++gCka++ v ++k +g++ ++ +++ Rmu_sc0016175.1_g000001.1 34 FYNRYAKEAGFSIRSHSSATSKDKKQLMRKEYVCYKQGDSKVEGEK-----RKRGLPKVGCKARIAVVRKKeSGRYAISVFVEG 112 *************************************9998877.....999*******9888777******** PP FAR1 85 HnHela 90 HnH+l+ Rmu_sc0016175.1_g000001.1 113 HNHPLT 118 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MESEDDQVYI PQVKAELMPK LYQEFETIDD VAAFYNRYAK EAGFSIRSHS SATSKDKKQL 60 MRKEYVCYKQ GDSKVEGEKR KRGLPKVGCK ARIAVVRKKE SGRYAISVFV EGHNHPLTSP 120 PRVHLLRSHR RRWHSKYWFY IADLYNYGRT CREEKKGHDG DLLYMHFQNE KEKDSSFVYT 180 MESDEENRFK RGLLHQRHSE LEEDHINIDE KAKTVMSLDI EDHMAKVYTR KLFYEVQEHC 240 RKFDSEGLPC RHVLAYLIKI QDVDKLPIQY ILKRWTKAAR QRVVIDSDGT EIKDNKALLA 300 RRTKLFEHAK YAIDKVMVSD EASQLFMEAL HAFLENIKPL ISNESGKSAV GLETKNDPIQ 360 HVFNEPDQVR AKGCGRRLKK GKEKKKVKVK DSQGRQCHGC GLFGQSHDKR NCPTLHGR

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MESEDDQVYI PQVKAELMPK LYQEFETIDD VAAFYNRYAK EAGFSIRSHS SATSKDKKQL  60
MRKEYVCYKQ GDSKVEGEKR KRGLPKVGCK ARIAVVRKKE SGRYAISVFV EGHNHPLTSP  120
PRVHLLRSHR RRWHSKYWFY IADLYNYGRT CREEKKGHDG DLLYMHFQNE KEKDSSFVYT  180
MESDEENRFK RGLLHQRHSE LEEDHINIDE KAKTVMSLDI EDHMAKVYTR KLFYEVQEHC  240
RKFDSEGLPC RHVLAYLIKI QDVDKLPIQY ILKRWTKAAR QRVVIDSDGT EIKDNKALLA  300
RRTKLFEHAK YAIDKVMVSD EASQLFMEAL HAFLENIKPL ISNESGKSAV GLETKNDPIQ  360
HVFNEPDQVR AKGCGRRLKK GKEKKKVKVK DSQGRQCHGC GLFGQSHDKR NCPTLHGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-14	FAR1 family protein