PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0016060.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 308aa    MW: 35862.2 Da    PI: 8.7228
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0016060.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox70.22.4e-221473357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Rmu_sc0016060.1_g000002.1 14 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 73
                               7*****************99**************************************97 PP
2Wus_type_Homeobox1161.8e-371375365
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Rmu_sc0016060.1_g000002.1 13 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 75
                               79***********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MREFNTVPQV VVSSRWNPTP EQLRALEELY RRGTRTPSAE QIQQITAQLR RYGKIEGKNV  60
FYWFQNHKAR ERQKRRRQME SHDDLQLMCS DHQKKESLGG ASRTVYEVEE TKNWAPSANC  120
MTTSLQDQLH HQQETVKAGA ESRTEAWVQF GEEELQPLQQ EQRRNSMTVE KNARWQMMQL  180
SCPPPPRLHD LTHLINAPTC TRTTVRTMEM DQKQLINNRN NKTSPPHDLS IFIAPYRSGA  240
ALNGRHLQHR NEEEDISRGD QSQTLQLFPL RSSTCGEKDN LTTEKSLLNP SFGTGPNYQF  300
FEFLPLKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-55WOX family protein