PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0015370.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 296aa    MW: 33535.9 Da    PI: 5.0888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0015370.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.14.8e-741429487374
                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                                  P+ ++++++  q I+e v ++++vH+iD++i  G+QW  L+qaLasR+ +   l+i +vg     ske++++tg+ L++fA+
  Rmu_sc0015370.1_g000001.1  14 KIPFCQIAQFAGIQGIVEKVVEAKKVHVIDLEIRSGVQWTVLMQALASRDFPLELLKISAVGT----SKETIQNTGKWLESFAK 93 
                                57*************************************************************....***************** PP

                       GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                                ++++pf+f+++++ ++ dl+ ++++++++E++aV   + l +++ ++  les    ++k++k++ P v vv+e ea+hns+ F+
  Rmu_sc0015370.1_g000001.1  94 TMNLPFSFKMVLVPDMLDLKEDMFELDSEETVAVYTEFVLRSMVPQPDRLES----LMKVIKNIHPSVTVVTEVEANHNSPVFV 173
                                ***********999*****************************977777777....**************************** PP

                       GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                                +rf+eal ++sa+fd++e+ + +++  r+++E +++g+ i+n+va+eg+er+ r+ +   Wr+ + + G+++++ls++   qa+
  Rmu_sc0015370.1_g000001.1 174 TRFIEALFFFSAFFDCVETCIEQNEPIRKSLESQYFGNGIKNIVATEGEERKIRNVKIDVWRAFFARYGMEEMELSSSSLYQAE 257
                                ************************************************************************************ PP

                       GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                l+ ++++ ++  ++  + ++l+ gWk+ pL s+S W+
  Rmu_sc0015370.1_g000001.1 258 LVAKNFPcGNSCTITMDGKTLIAGWKGTPLQSLSLWK 294
                                *******9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MMITNETSLA CHNKIPFCQI AQFAGIQGIV EKVVEAKKVH VIDLEIRSGV QWTVLMQALA  60
SRDFPLELLK ISAVGTSKET IQNTGKWLES FAKTMNLPFS FKMVLVPDML DLKEDMFELD  120
SEETVAVYTE FVLRSMVPQP DRLESLMKVI KNIHPSVTVV TEVEANHNSP VFVTRFIEAL  180
FFFSAFFDCV ETCIEQNEPI RKSLESQYFG NGIKNIVATE GEERKIRNVK IDVWRAFFAR  240
YGMEEMELSS SSLYQAELVA KNFPCGNSCT ITMDGKTLIA GWKGTPLQSL SLWKFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.16e-35GRAS family protein