PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0015238.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 400aa MW: 46351.6 Da PI: 9.8166

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0015238.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.8e-20	34	118	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 fYn+YAke+ Fs+ ++s ++k+n++ +++++vC+k+g+++ e +k +r + gCka++ v ++k +g++ ++ +++ Rmu_sc0015238.1_g000001.1 34 FYNRYAKEAVFSIISQSSATNKDNTQLMRKEYVCYKQGTSKVEGEK-----CKRGLPKLGCKARIAVVRKKeSGRYAISIFVEG 112 *************************************9998877.....999*******9888777******** PP FAR1 85 HnHela 90 HnH+l+ Rmu_sc0015238.1_g000001.1 113 HNHPLT 118 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MELEDDHVYI PQVKAELMPK LHQEFETIDD VAAFYNRYAK EAVFSIISQS SATNKDNTQL 60 MRKEYVCYKQ GTSKVEGEKC KRGLPKLGCK ARIAVVRKKE SGRYAISIFV EGHNHPLTSP 120 PRFKRGLLHQ HHYELEEDHI NINEKPKTVI FLDIEDHMAK VYTRKVFYEV QEQLKERFKY 180 KLELLRENVT PCVFKVVRKN TNTCKSRELI YEKAYDFASC SSRKIESERL PCRHVLSYLI 240 KIQDVDKLPI QCILKRWTKA ARQSLVLDSD GMKVKDNKAL LARRTKLFQH ATYAIDKAMV 300 SDEASQLFME CLDAFLENLK TLIGNESGQS AVVLETKIDA IQHIFKEPNQ VRAKGCGRRL 360 KKGREKRKVK VKESQGRQYH GCGLFGQSHD KRNCPTLHGK

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MELEDDHVYI PQVKAELMPK LHQEFETIDD VAAFYNRYAK EAVFSIISQS SATNKDNTQL  60
MRKEYVCYKQ GTSKVEGEKC KRGLPKLGCK ARIAVVRKKE SGRYAISIFV EGHNHPLTSP  120
PRFKRGLLHQ HHYELEEDHI NINEKPKTVI FLDIEDHMAK VYTRKVFYEV QEQLKERFKY  180
KLELLRENVT PCVFKVVRKN TNTCKSRELI YEKAYDFASC SSRKIESERL PCRHVLSYLI  240
KIQDVDKLPI QCILKRWTKA ARQSLVLDSD GMKVKDNKAL LARRTKLFQH ATYAIDKAMV  300
SDEASQLFME CLDAFLENLK TLIGNESGQS AVVLETKIDA IQHIFKEPNQ VRAKGCGRRL  360
KKGREKRKVK VKESQGRQYH GCGLFGQSHD KRNCPTLHGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	2e-14	FAR1 family protein