PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0014584.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 444aa MW: 48591.3 Da PI: 9.1686

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0014584.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.6	2.9e-25	111	156	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 d+epgrCrRtDGKkWRCsr+v++++k+CE+H+hrgr+rsrk++e+s Rmu_sc0014584.1_g000012.1 111 DTEPGRCRRTDGKKWRCSRDVVPDEKYCEKHMHRGRHRSRKPVETS 156 689***************************************9975 PP
2	WRC	71.3	1.1e-22	328	369	2	43
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 epgrCrRtDGKkWRC+r+vl+++k+C+rH+hrg ++ r+s+ Rmu_sc0014584.1_g000012.1 328 LEPGRCRRTDGKKWRCKREVLPDQKYCDRHIHRGVKQMRTSG 369 59*********************************9998875 PP
3	QLQ	47.4	6.1e-17	45	80	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTaaQl +L++Q l+yKy+aa++P P +L+++i+k Rmu_sc0014584.1_g000012.1 45 EFTAAQLDELEHQRLVYKYIAAGLPAPFQLVLPIWK 80 5*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MDDTQVVKVK HEDDEGSPPP SIKLGLSIGG DGGDCEVVGK RRRSEFTAAQ LDELEHQRLV 60 YKYIAAGLPA PFQLVLPIWK SVAAGFSNAA FYQQYPSFLG YGGFDYRSKM DTEPGRCRRT 120 DGKKWRCSRD VVPDEKYCEK HMHRGRHRSR KPVETSQVTS PPSTKLLKNS DGEQLNSKKN 180 LQIQTPKGLQ LMAQPSNNGS VSHSRTTFSS GYHELPKNIS TVARTTSTPS YRTAVTPAAV 240 APSTTAGQVI ATASTCNDNN IWIGVKDYGC NYHAGNYGII RGSRNNVNVG SNISSGSGFS 300 PKSVLQAGHM ILVNCNGLYF DNRHGEELEP GRCRRTDGKK WRCKREVLPD QKYCDRHIHR 360 GVKQMRTSGP VTAASTSATA MNSTRSSQTT GIAGETDCAI PNTNLTMSIP ARSPLMQNDE 420 KSDSTSDSDA TITDTSLAAY EQQI

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MDDTQVVKVK HEDDEGSPPP SIKLGLSIGG DGGDCEVVGK RRRSEFTAAQ LDELEHQRLV  60
YKYIAAGLPA PFQLVLPIWK SVAAGFSNAA FYQQYPSFLG YGGFDYRSKM DTEPGRCRRT  120
DGKKWRCSRD VVPDEKYCEK HMHRGRHRSR KPVETSQVTS PPSTKLLKNS DGEQLNSKKN  180
LQIQTPKGLQ LMAQPSNNGS VSHSRTTFSS GYHELPKNIS TVARTTSTPS YRTAVTPAAV  240
APSTTAGQVI ATASTCNDNN IWIGVKDYGC NYHAGNYGII RGSRNNVNVG SNISSGSGFS  300
PKSVLQAGHM ILVNCNGLYF DNRHGEELEP GRCRRTDGKK WRCKREVLPD QKYCDRHIHR  360
GVKQMRTSGP VTAASTSATA MNSTRSSQTT GIAGETDCAI PNTNLTMSIP ARSPLMQNDE  420
KSDSTSDSDA TITDTSLAAY EQQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-33	GRF family protein