PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0013358.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 385aa MW: 43891.7 Da PI: 6.1467

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0013358.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.7	8.6e-11	11	58	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +WT E+e l+ +v+++G+g+WktI ++ + +k+c + w k++ Rmu_sc0013358.1_g000003.1 11 SWTSKEEEALAAGVHKYGSGNWKTILKYSKfaRYLARKSCGDLWKKWR 58 7*****************************998899999999999986 PP
2	Myb_DNA-binding	25.5	3.1e-08	108	133	4	29
S-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIar 29 WT eE+e l+ +v+++G++ Wk I + Rmu_sc0013358.1_g000003.1 108 WTVEEEEALAAGVEKYGTNKWKHILE 133 ************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MRELIRKQYK SWTSKEEEAL AAGVHKYGSG NWKTILKYSK FARYLARKSC GDLWKKWRTM 60 AFRVSNEKLK TMSPKVKKVV AARLEAINDG KNSAFAERKE RGITGSGWTV EEEEALAAGV 120 EKYGTNKWKH ILEDPEFSPV LAIHPCTSLA NKWRNLTDSV SEEKLRRMSC KVRKVMDASL 180 RQKINDDQGE ETERVSKMEE DTEESTMSTK VRKVVDDEVQ NSANPNEAVK ETERVPDHEM 240 VEEDETLMMD VESSADRAEA VKENERILKM KEDAKSMLLL AKEIWGHCST EDTNRVSAPA 300 CPQAVKESKR ISEIAELDID RFSAAPPPQA EKKTKIFSEM EVDTDRGPAP APPKAVEETK 360 RISDTAEDTK SMLLFMNQIY ERFTQ

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MRELIRKQYK SWTSKEEEAL AAGVHKYGSG NWKTILKYSK FARYLARKSC GDLWKKWRTM  60
AFRVSNEKLK TMSPKVKKVV AARLEAINDG KNSAFAERKE RGITGSGWTV EEEEALAAGV  120
EKYGTNKWKH ILEDPEFSPV LAIHPCTSLA NKWRNLTDSV SEEKLRRMSC KVRKVMDASL  180
RQKINDDQGE ETERVSKMEE DTEESTMSTK VRKVVDDEVQ NSANPNEAVK ETERVPDHEM  240
VEEDETLMMD VESSADRAEA VKENERILKM KEDAKSMLLL AKEIWGHCST EDTNRVSAPA  300
CPQAVKESKR ISEIAELDID RFSAAPPPQA EKKTKIFSEM EVDTDRGPAP APPKAVEETK  360
RISDTAEDTK SMLLFMNQIY ERFTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17520.1	4e-11	MYB_related family protein