PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0012989.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 262aa    MW: 30301.1 Da    PI: 9.1346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0012989.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191764148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  Rmu_sc0012989.1_g000008.1 17 KGPWTSEEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64
                               79********************************************97 PP
2Myb_DNA-binding51.81.8e-1670114147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Rmu_sc0012989.1_g000008.1  70 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                                7888******************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MAAHMGWGII EEEGWRKGPW TSEEDRLLIE YVRLHGEGRW NSVARLAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPHEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK  120
VPSDASEKAK TRLLRRQQFH HQQQQQQQLQ LINQADMKRI MALLDENDTK ISSWPPQAAQ  180
GKQDVDTSTI AYPNHTITEE QGFFYSMLNG NVPQQVAEAS SSEDSFLWDG LWNLDDVHVN  240
FTTSSCATGK ASTFHNFVVP FC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.14e-92MYB family protein