PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G24310.1 | ||||||||
Common Name | ATMYB71, MYB305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30786.6 Da PI: 8.869 | ||||||||
Description | myb domain protein 305 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.2 | 1e-19 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+d+v+++G g+W+++ar g++R +k+c++rw +yl AT3G24310.1 20 KGPWTAEEDRLLIDYVQLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ AT3G24310.1 73 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.403 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-31 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-17 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-18 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 21 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-12 | 22 | 67 | No hit | No description |
PROSITE profile | PS51294 | 19.682 | 72 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-15 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-14 | 73 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 75 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-10 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MSLWGGMGGG WGMVEEGWRK GPWTAEEDRL LIDYVQLHGE GRWNSVARLA GLKRNGKSCR 60 LRWVNYLRPD LKRGQITPHE ETIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK 120 KTKSPTNSAE KTKNRILKRQ QFQQQRQMEL QQEQQLLQFN QIDMKKIMSL LDDDNNNGDN 180 TFSSSSSGES GALYVPHQIT HSTTTSGCEP NSNGYYPVVP VTIPEANVNE DNAIWDGLWN 240 LDFEGQGSFG GAACAPRKHY FQNMVIPFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 20 | 122 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 1732512 | 0.0 | ||||
Genevisible | 257163_at | 0.0 | ||||
Expression Atlas | AT3G24310 | - | ||||
AtGenExpress | AT3G24310 | - | ||||
ATTED-II | AT3G24310 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | snapdragon myb protein 305 homolog (myb) |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G24310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G24310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY550298 | 0.0 | AY550298.1 Arabidopsis thaliana MYB transcription factor (At3g24310) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_189074.1 | 0.0 | myb domain protein 305 | ||||
TrEMBL | A0A384L796 | 0.0 | A0A384L796_ARATH; MYB305 | ||||
TrEMBL | Q9LK14 | 0.0 | Q9LK14_ARATH; MYB-like DNA-binding domain protein | ||||
STRING | AT3G24310.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3107 | 27 | 66 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT3G24310.1 |
Entrez Gene | 822019 |
iHOP | AT3G24310 |
wikigenes | AT3G24310 |
Publications ? help Back to Top | |||
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