PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011992.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 688aa MW: 79963.7 Da PI: 5.9824

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011992.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9e-22	65	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkl 81 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++ Rmu_sc0011992.1_g000009.1 65 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQF 147 59******************8888.***************************************99867789** PP FAR1 82 eleHnHela 90 ++ HnHel Rmu_sc0011992.1_g000009.1 148 SNVHNHELL 156 *****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MPSKNIWIRR QQCPCGDWKC YVTYDGDSEE TSLAAQLVKN DTSTSEAMVS PYVGMVFKSD 60 DDAFEYYGNF ARKNGFSIRK ERSRLSPQLG IYKRDFVCYR SGFAPAKKKP TGEHHRDRKS 120 VRCGCDAKMY LSKEVVDGVS QWFVVQFSNV HNHELLEDDQ VRLLPAYRKI QEADQQRILL 180 LSKAGFPIHR IVKVLELEKG IQGGQLPFLE RDVRNFVQNR KKVVQENDAL ITEKRENDTL 240 ELLEACKVTK EADEDFVYDF TVDENDKVEH IAWSYGDSVN AYTMFGDAVY FDTMYQSITY 300 GMLFGAWLGI DNHGRTIFFG CVLLQDETPR SFSWALQTFV RFMRGRWPQT IITDLDTGLR 360 DAITSELPNT KHVISLWNIL PKVSSWFSVS LGSRYAEFKS ELDVLYRVES TEDFELQWNQ 420 MNLIYGLSTD KHIALLHSFR ASWALCYMRG CFVARMATTD YSKSIEAFLK GVFSTQTCLR 480 SFFEQVGISA NFQNQARREM QYMHTKTCIP IEEHARSILT PFAFNALQRE LVLAMQYAVS 540 EMPNGSCIVR HFKEIDGERL VIWIPEDEQI HCSCKEFESS GLLCRHLLRV FIVKNYFQLP 600 DKYYLNRWQR ESSLDFYDPH ITQNSDDQWY QDYQCLAETL FTESSITKER SEYVQREVTT 660 HLTRILNEVR NMPESEGVAM DLTFSPAG

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MPSKNIWIRR QQCPCGDWKC YVTYDGDSEE TSLAAQLVKN DTSTSEAMVS PYVGMVFKSD  60
DDAFEYYGNF ARKNGFSIRK ERSRLSPQLG IYKRDFVCYR SGFAPAKKKP TGEHHRDRKS  120
VRCGCDAKMY LSKEVVDGVS QWFVVQFSNV HNHELLEDDQ VRLLPAYRKI QEADQQRILL  180
LSKAGFPIHR IVKVLELEKG IQGGQLPFLE RDVRNFVQNR KKVVQENDAL ITEKRENDTL  240
ELLEACKVTK EADEDFVYDF TVDENDKVEH IAWSYGDSVN AYTMFGDAVY FDTMYQSITY  300
GMLFGAWLGI DNHGRTIFFG CVLLQDETPR SFSWALQTFV RFMRGRWPQT IITDLDTGLR  360
DAITSELPNT KHVISLWNIL PKVSSWFSVS LGSRYAEFKS ELDVLYRVES TEDFELQWNQ  420
MNLIYGLSTD KHIALLHSFR ASWALCYMRG CFVARMATTD YSKSIEAFLK GVFSTQTCLR  480
SFFEQVGISA NFQNQARREM QYMHTKTCIP IEEHARSILT PFAFNALQRE LVLAMQYAVS  540
EMPNGSCIVR HFKEIDGERL VIWIPEDEQI HCSCKEFESS GLLCRHLLRV FIVKNYFQLP  600
DKYYLNRWQR ESSLDFYDPH ITQNSDDQWY QDYQCLAETL FTESSITKER SEYVQREVTT  660
HLTRILNEVR NMPESEGVAM DLTFSPAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein