PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G28530.1
Common NameFRS10, T26D3.9
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family FAR1
Protein Properties Length: 685aa    MW: 78525.4 Da    PI: 6.0527
Description FAR1-related sequence 10
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G28530.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.65e-2469160190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  ++Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r+r++ r+gC+ kl ++ke     ++w+v+++++ HnHel 
  AT5G28530.1  69 EYYSTFARKSGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDGKLYLTKEVvdgVSHWYVSQFSNVHNHELL 160
                  69********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.9E-2269160IPR004330FAR1 DNA binding domain
PfamPF105515.5E-19292385IPR018289MULE transposase domain
PROSITE profilePS509669.458565603IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-7575602IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6578605IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009639Biological Processresponse to red or far red light
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MALKPLNNIW IRRQQCPCGD WKCYIRLEED ESTITKSEIE STPTPTSQYD TVFTPYVGQI  60
FTTDDEAFEY YSTFARKSGF SIRKARSTES QNLGVYRRDF VCYRSGFNQP RKKANVEHPR  120
ERKSVRCGCD GKLYLTKEVV DGVSHWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQQSDQE  180
RILLLSKAGF PVNRIVKLLE LEKGVVSGQL PFIEKDVRNF VRACKKSVQE NDAFMTEKRE  240
SDTLELLECC KGLAERDMDF VYDCTSDENQ KVENIAWAYG DSVRGYSLFG DVVVFDTSYR  300
SVPYGLLLGV FFGIDNNGKA MLLGCVLLQD ESCRSFTWAL QTFVRFMRGR HPQTILTDID  360
TGLKDAIGRE MPNTNHVVFM SHIVSKLASW FSQTLGSHYE EFRAGFDMLC RAGNVDEFEQ  420
QWDLLVTRFG LVPDRHAALL YSCRASWLPC CIREHFVAQT MTSEFNLSID SFLKRVVDGA  480
TCMQLLLEES ALQVSAAASL AKQILPRFTY PSLKTCMPME DHARGILTPY AFSVLQNEMV  540
LSVQYAVAEM ANGPFIVHHY KKMEGECCVI WNPENEEIQC SCKEFEHSGI LCRHTLRVLT  600
VKNCFHIPEQ YFLLRWRQES PHVATENQNG QGIGDDSAQT FHSLTETLLT ESMISKDRLD  660
YANQELSLLI DRVRNTAPAN CLYQP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.550700.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO223271450.0
Genevisible245954_at0.0
Expression AtlasAT5G28530-
AtGenExpressAT5G28530-
ATTED-IIAT5G28530-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G28530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G28530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT26D30.0AF262043.1 Arabidopsis thaliana BAC T26D3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_198205.20.0FAR1-related sequence 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A1P8BEG30.0A0A1P8BEG3_ARATH; FAR1-related sequence 10
STRINGAT5G28530.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17652674
Representative plantOGRP3012351
Publications ? help Back to Top
  1. Rohde A, et al.
    Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism.
    Plant Cell, 2004. 16(10): p. 2749-71
    [PMID:15377757]
  2. Lin R,Wang H
    Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.
    Plant Physiol., 2004. 136(4): p. 4010-22
    [PMID:15591448]
  3. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  4. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]