PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011180.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

GRF

Protein Properties

Length: 468aa MW: 52183.7 Da PI: 10.0057

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011180.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.1	6.3e-23	76	120	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+ Rmu_sc0011180.1_g000001.1 76 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 120 79***************************************9986 PP
2	WRC	72.1	6.3e-23	214	258	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+ Rmu_sc0011180.1_g000001.1 214 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 258 79***************************************9986 PP
3	QLQ	49.2	1.6e-17	14	49	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q++++++Q+l++KyL a++PvPp+Ll++i++ Rmu_sc0011180.1_g000001.1 14 LFTVSQWAEMEHQALVFKYLKAGLPVPPDLLVPIRN 49 69********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MSRSLVGGGG HAPLFTVSQW AEMEHQALVF KYLKAGLPVP PDLLVPIRNS FNLIYPDFLR 60 HPASLAYASF CGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVES 120 QTASQSLSTV ASSDIRTGSR SHSGSFQNMP LHSPGNSGSL CFGSDVSQLK MEPIPYGIVK 180 RGNRFDMTAS ILLMQLFFHV STLAYASFCG KKIDPEPGRC RRTDGKKWRC SKDAHPDSKY 240 CERHMNRGRY RSRKLVESQT ASQSLSTVAS SDIRTGSRSH SGSFQNMPLH SPGNSGSLCF 300 GSDVSQLKME PIPYGIVKRG NRVLDGAEEH NFMPEASGSA RSAGVDSTID SPWRLMTSHV 360 PLNSSSEPRN GSFLLNNSQL QTLQDSEPLT VDAAMTKQQQ RQYVGGEFGV LRSLKQEQHS 420 LQPFFDEWPK SRDLGFHHND PRSTNNLSNT TQLSMSNLVA PSNFFKER

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MSRSLVGGGG HAPLFTVSQW AEMEHQALVF KYLKAGLPVP PDLLVPIRNS FNLIYPDFLR  60
HPASLAYASF CGKKIDPEPG RCRRTDGKKW RCSKDAHPDS KYCERHMNRG RYRSRKLVES  120
QTASQSLSTV ASSDIRTGSR SHSGSFQNMP LHSPGNSGSL CFGSDVSQLK MEPIPYGIVK  180
RGNRFDMTAS ILLMQLFFHV STLAYASFCG KKIDPEPGRC RRTDGKKWRC SKDAHPDSKY  240
CERHMNRGRY RSRKLVESQT ASQSLSTVAS SDIRTGSRSH SGSFQNMPLH SPGNSGSLCF  300
GSDVSQLKME PIPYGIVKRG NRVLDGAEEH NFMPEASGSA RSAGVDSTID SPWRLMTSHV  360
PLNSSSEPRN GSFLLNNSQL QTLQDSEPLT VDAAMTKQQQ RQYVGGEFGV LRSLKQEQHS  420
LQPFFDEWPK SRDLGFHHND PRSTNNLSNT TQLSMSNLVA PSNFFKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-41	GRF family protein