PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0011069.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Nin-like

Protein Properties

Length: 838aa MW: 93857.1 Da PI: 7.3376

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0011069.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.4	3.4e-24	75	125	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s+e++s+yF++pi+ AA e++v++T+LK++CR++GI+RWP Rk++s+ Rmu_sc0011069.1_g000003.1 75 AKMLSQETISEYFYMPITRAAEEMNVSVTTLKKRCRELGIHRWPCRKLNSV 125 5789*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence
MYVLPLAFTM FLSGSEYVPS GWEDELLLTD DTFLGDGFGV GIDGEEGMSN NLNTTSCNTE 60 DRSGIASSSS KPSKAKMLSQ ETISEYFYMP ITRAAEEMNV SVTTLKKRCR ELGIHRWPCR 120 KLNSVKNLEE IIQALYRSAQ AYIQLADLYL AKLDIKKDHE IDPNNINVQL EYKTSKEKMK 180 GGKVLWQHAG YGGGISGNYY CAGSYHLQGN SYNQAQMFFP PPYLQSILPI APQSLTITPQ 240 TPSIPPYHSP HPTPNIWIHP SIPNFQSPAA PTFMPQPQFP NPKPPSSFRS VGDCEPLALF 300 TGWIQTIPSS SSLSSDPQTS LAEATNPTSL HHKSFRRSRH RVAMAAKVRV AKKTRNPYML 360 HGVGKSSRSK MYHKRNLFPR HNSKATNPTS PTPISSVPEK MEVFHSTLPV SAIMDGLEKL 420 RRQENNIPPG QMQSDKTVGG RDDAFNTFFN ETGAGLHIPR AVFLDLEPTV INEVRTGTYQ 480 LFHPEQLISG KEDATNNFTR GHYTIGKEIV DRIRKLADNC TGLQWFLVSH AVRGGTGSGL 540 GSLLLERLSV DYGNKSKLGF TVYPSPQVST SVVEPYNNVL STRSLWEHTN VAVLLDNEAI 600 YDICRRLLDI ERPTYTNLNR LVSQVISSLT ASLLFDPASG VQAPLECHPL SVVRIDECLS 660 SLDFVLIVEK NEKFSSHSPA MNFANSLETL EDVKKLFLKM PERNIVSWNT LISALVQIGQ 720 EEKAMPVYYA LVSEGVVPPN SNLYMMPPYD FKVDNHRCGF QRILIEPLIA FYLRCINKQS 780 SLGRYDDSHP KVSSTFLNEE EYMFVIIINV CTALVLKYCP TGMVEVSEKW FMDMVDMN

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence

MYVLPLAFTM FLSGSEYVPS GWEDELLLTD DTFLGDGFGV GIDGEEGMSN NLNTTSCNTE  60
DRSGIASSSS KPSKAKMLSQ ETISEYFYMP ITRAAEEMNV SVTTLKKRCR ELGIHRWPCR  120
KLNSVKNLEE IIQALYRSAQ AYIQLADLYL AKLDIKKDHE IDPNNINVQL EYKTSKEKMK  180
GGKVLWQHAG YGGGISGNYY CAGSYHLQGN SYNQAQMFFP PPYLQSILPI APQSLTITPQ  240
TPSIPPYHSP HPTPNIWIHP SIPNFQSPAA PTFMPQPQFP NPKPPSSFRS VGDCEPLALF  300
TGWIQTIPSS SSLSSDPQTS LAEATNPTSL HHKSFRRSRH RVAMAAKVRV AKKTRNPYML  360
HGVGKSSRSK MYHKRNLFPR HNSKATNPTS PTPISSVPEK MEVFHSTLPV SAIMDGLEKL  420
RRQENNIPPG QMQSDKTVGG RDDAFNTFFN ETGAGLHIPR AVFLDLEPTV INEVRTGTYQ  480
LFHPEQLISG KEDATNNFTR GHYTIGKEIV DRIRKLADNC TGLQWFLVSH AVRGGTGSGL  540
GSLLLERLSV DYGNKSKLGF TVYPSPQVST SVVEPYNNVL STRSLWEHTN VAVLLDNEAI  600
YDICRRLLDI ERPTYTNLNR LVSQVISSLT ASLLFDPASG VQAPLECHPL SVVRIDECLS  660
SLDFVLIVEK NEKFSSHSPA MNFANSLETL EDVKKLFLKM PERNIVSWNT LISALVQIGQ  720
EEKAMPVYYA LVSEGVVPPN SNLYMMPPYD FKVDNHRCGF QRILIEPLIA FYLRCINKQS  780
SLGRYDDSHP KVSSTFLNEE EYMFVIIINV CTALVLKYCP TGMVEVSEKW FMDMVDMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-17	Nin-like family protein