PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0010892.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 442aa    MW: 48989.5 Da    PI: 7.2188
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0010892.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox474.5e-152888257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               r+R+ +++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  Rmu_sc0010892.1_g000017.1 28 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 88
                               89*****************99*************************************997 PP
2Homeobox474.5e-15150210257
                                T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                r+R+ +++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  Rmu_sc0010892.1_g000017.1 150 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 210
                                89*****************99*************************************997 PP
3Wus_type_Homeobox103.61.3e-332790265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  Rmu_sc0010892.1_g000017.1 27 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 90
                               589***********************************************************97 PP
4Wus_type_Homeobox103.61.3e-33149212265
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
  Rmu_sc0010892.1_g000017.1 149 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 212
                                589***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MEDHQGQEAK EPNSPNSNGS SERSEPVRSR WIPKPEQILI LESIFNSGMV NPPKEETVRI  60
RKLLEKFGSV GDANVFYWFQ NRRSRSRRRQ RQLQASLEQR NQAAADQQVG GAIQYGSSST  120
TIMEDHQGQE AKEPNSPNSN GSSERSEPVR SRWIPKPEQI LILESIFNSG MVNPPKEETV  180
RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQASLE QRNQEAADQQ VGGAIQYGSS  240
STTSFSAPPP PPPAMAFGAS TPLTFGSNYD LVGDSSSSSC AAMATDDHFF SVSGQMGFPD  300
IEHSSSGVTS VLGPSDASSL HFQSGVNLMM TVFINGVPTE VPRGPLDMKA MFGTQDVLLV  360
HSSGVPLPIN EFGFLAHSLQ PGESYFLNMG EIGKWRNVIF DETAWRVYVD SSSEKKQLGL  420
QTDQYNQSTT DGCSKKNIKA RP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-29WOX family protein