PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0009959.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 27023.5 Da PI: 10.5249 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 113 | 160 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdell+++ + +G+ W+ I++ g++R++k+c++rw++yl Rmu_sc0009959.1_g000001.1 113 KGAWSAEEDELLIRYMRTHGMCKWRDIPQGAGLNRCEKSCRLRWRNYL 160 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 166 | 210 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ Rmu_sc0009959.1_g000001.1 166 RGNISDDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNSN 210 78999*****************.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MQTPQLVQLL CYWICLFLMP QGHSIGLVHC GKRIQTNYVA VDCSVAFVKT HKEFHCFLCL 60 HVTLHFGGNI ASAGRKATKR IRSSGLKPSI YPDFQFQRKM VRKPCCNKDS VNKGAWSAEE 120 DELLIRYMRT HGMCKWRDIP QGAGLNRCEK SCRLRWRNYL RPDIVRGNIS DDEEDLIIRL 180 HKLLGNRWSL IAGRLPGRTD NEIKNHWNSN LRKRLLKKAP RNQSKAHHPR GEP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 9e-55 | MYB family protein |