PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008380.1_g000003.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 699aa MW: 80128.1 Da PI: 6.9399

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008380.1_g000003.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.2	8.8e-26	600	689	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+Y+ + GFs+r++++ k+k++geit+r fvC keg r+++k++ r++raetrtgC+a+l +k+++ ++k+ vt++++ Rmu_sc0008380.1_g000003.1 600 DFYNRYGGKEGFSIRRESHAKNKKTGEITSRVFVCCKEGIRSKDKRE-YMIRKSRAETRTGCHAELCIKLNReNNKFFVTHFVE 682 6*****************************************999.99*****************99******* PP FAR1 84 eHnHela 90 eHnH l+ Rmu_sc0008380.1_g000003.1 683 EHNHLLV 689 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MQKHSRKATF NRSKAKQNMA SLTNKAASSS IDQKHYTYEV FLSFRGEDTR FNFTDHLYTA 60 LCQRGIVTFI DADKLRRGEE ISAALLKAIE ESRVSIIVFS QNYASSRWCL DELVKILECR 120 KSKGQEVISV FYKVDPSHVR HQTGAFGDAF ATLDQFKYKD SMDKWREALS DAANLSGWPY 180 EEDRSETEFI QEIVGDLSAR IVNPSCVLPV AAHPIGIESF RQDVKRLLEE NNMVGIWGPG 240 GIGKTTIAKD VFNSISHEFE CRCFLADVGS NALVQLQETF LFDILRDSTL KVRNVDQGVG 300 LIKTRMQNKK VLLILDGVSH SSQLQNLVPS LDCFEPGSRI LITTRDKRWL IAHQVDEVYE 360 VKLLDDHQAL NLFSLNAFNR NGPPSDYLEL AQRAVRYAQG LPLALIVLGS HLFRKSRDEW 420 EATLDGRKGE DPHIEIRNVL KISYDALGGD LKGYFLDIAC FFKDKYVDNV KPILESCYEL 480 KLVTGIAQLQ QKALIRIDNE TYKGGRIWMH DLIEEMGKAI VYQESEPGER SRLWNYDDVN 540 HVLTYNTVSI LSIYCTRNWL QMDNALGATD VNVENFDFDL ELDWKPRKGM EFDSEQAAYD 600 FYNRYGGKEG FSIRRESHAK NKKTGEITSR VFVCCKEGIR SKDKREYMIR KSRAETRTGC 660 HAELCIKLNR ENNKFFVTHF VEEHNHLLVV KECSHMLPS

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MQKHSRKATF NRSKAKQNMA SLTNKAASSS IDQKHYTYEV FLSFRGEDTR FNFTDHLYTA  60
LCQRGIVTFI DADKLRRGEE ISAALLKAIE ESRVSIIVFS QNYASSRWCL DELVKILECR  120
KSKGQEVISV FYKVDPSHVR HQTGAFGDAF ATLDQFKYKD SMDKWREALS DAANLSGWPY  180
EEDRSETEFI QEIVGDLSAR IVNPSCVLPV AAHPIGIESF RQDVKRLLEE NNMVGIWGPG  240
GIGKTTIAKD VFNSISHEFE CRCFLADVGS NALVQLQETF LFDILRDSTL KVRNVDQGVG  300
LIKTRMQNKK VLLILDGVSH SSQLQNLVPS LDCFEPGSRI LITTRDKRWL IAHQVDEVYE  360
VKLLDDHQAL NLFSLNAFNR NGPPSDYLEL AQRAVRYAQG LPLALIVLGS HLFRKSRDEW  420
EATLDGRKGE DPHIEIRNVL KISYDALGGD LKGYFLDIAC FFKDKYVDNV KPILESCYEL  480
KLVTGIAQLQ QKALIRIDNE TYKGGRIWMH DLIEEMGKAI VYQESEPGER SRLWNYDDVN  540
HVLTYNTVSI LSIYCTRNWL QMDNALGATD VNVENFDFDL ELDWKPRKGM EFDSEQAAYD  600
FYNRYGGKEG FSIRRESHAK NKKTGEITSR VFVCCKEGIR SKDKREYMIR KSRAETRTGC  660
HAELCIKLNR ENNKFFVTHF VEEHNHLLVV KECSHMLPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45050.2	2e-60	WRKY family protein