PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0008328.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 617aa MW: 69703 Da PI: 4.952 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.1 | 8e-24 | 16 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk......kvkaeek......ewyfFskrdkkyat 70 l pG+rF P +eel+ +yL++kv+g++++ e+ i + ++y + ePwd+ k + ++yfF++r+k + + Rmu_sc0008328.1_g000002.1 16 LLPGYRFCPLEEELILRYLCPKVKGEEVPGEDYlIFNSNLYgEQEPWDIWDmykerrK-----NdlrfnkDLYFFTQRKKMTVN 94 579************************99988879999998356*****642333221.....123333377************ PP NAM 71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +rk r++ sg+Wk k+v++ +g +vg +k +++ k + + ++ +W+m e++l Rmu_sc0008328.1_g000002.1 95 ASRKGRSIGSGTWKGGDAAKNVYA-SGIVVGYRKRFTYEK--KGSEQHGRWIMLEFEL 149 ************************.999*********984..4444689*******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 617 aa Download sequence |
MDIHEDGNEL HDEHQLLPGY RFCPLEEELI LRYLCPKVKG EEVPGEDYLI FNSNLYGEQE 60 PWDIWDMYKE RRKNDLRFNK DLYFFTQRKK MTVNASRKGR SIGSGTWKGG DAAKNVYASG 120 IVVGYRKRFT YEKKGSEQHG RWIMLEFELD HSQVGMLDQQ EAQKYVLCIL RKNEGSKEKR 180 KRVDDDDREK LATGDDVPDD CQALDGYKNM KQEESEIKQG EEDQLMHAIT GDVRDAGPSL 240 SSELQGEENC WVQYLSPILL VHDDYVLPPY ADALQWEEEN YLGKQSTVPG FEDNVQPFLV 300 ADHELQRKAE NCGKQCLEHR PLVPPFTADC EIMIHMLGAE NYLSKQCPVQ CIYCDFDVQP 360 FAAADELSNI YMLGEEHPVP RVAEQEGSSL KEKQNASMVS TSTDHQPDMV ASKSTSTDHH 420 RADDPIGSND VDEGLAAGTH GFKYNPWILS FSEELLRGAR SKSKHREPAE PDRIEPEPAV 480 RSPTTSALTI AASKLVVFLS AARLDTKLTV LVTEKFSEAG LDLMKESTTA SRIGYVFDLL 540 LSLSPTTDHH GNRNLIVSPV PGCNRSHCNR SQISVKANVL TSSETCKRSP DSILTWSFGA 600 SRTSDKQNWR SPDLIPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 9e-17 | NAC family protein |