PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0008246.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 444aa MW: 49096.4 Da PI: 8.4453

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0008246.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.1e-14	85	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++m +R +k+c +rw +yl Rmu_sc0008246.1_g000001.1 85 RQRWQPEEDALLRAYVKQYGPKEWALVSQRMAqpINRDPKSCLERWKNYL 134 89******************************99**********97 PP
2	Myb_DNA-binding	35.4	2.5e-11	140	184	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Rmu_sc0008246.1_g000001.1 140 KGSLSPEEQSLVIQLQAKYGNK-WKKIAAELP-GRTPKRLGKWWEVF 184 57789***************.*****.***999999776 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
TNIFHQAVIE VNEDGTTAAA ATVAIWVGAS APPPQEIQDF VADHPFMLFS SEKVVERSLC 60 FCLAGSSSSS SRPTPTKYGA EMKERQRWQP EEDALLRAYV KQYGPKEWAL VSQRMAQPIN 120 RDPKSCLERW KNYLRPGLKK GSLSPEEQSL VIQLQAKYGN KWKKIAAELP GRTPKRLGKW 180 WEVFREKQLK HKPGSSSAAA AAGASQASTA ASSSSTQPPE GSIPVAAGIS SPEKAAQGPY 240 DHILETFAEK YVQPKLYGMM SEPDPLLSLG SAAATPSVLP PWMNPPSATS STSSTTPSPS 300 VSLSLSPSDP GYDPDPTRVQ MGTLVQWCKE VEEGRQSWVQ HKKEATWRLS RLEQQLESEK 360 ARKRREAMEE IEAKIRALRE EEMAFMGRIE SDYREQMSVL QREAESKEAK LVEAWCSKHV 420 KLAKLVDQIG GHGHNNHASH GFTS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

TNIFHQAVIE VNEDGTTAAA ATVAIWVGAS APPPQEIQDF VADHPFMLFS SEKVVERSLC  60
FCLAGSSSSS SRPTPTKYGA EMKERQRWQP EEDALLRAYV KQYGPKEWAL VSQRMAQPIN  120
RDPKSCLERW KNYLRPGLKK GSLSPEEQSL VIQLQAKYGN KWKKIAAELP GRTPKRLGKW  180
WEVFREKQLK HKPGSSSAAA AAGASQASTA ASSSSTQPPE GSIPVAAGIS SPEKAAQGPY  240
DHILETFAEK YVQPKLYGMM SEPDPLLSLG SAAATPSVLP PWMNPPSATS STSSTTPSPS  300
VSLSLSPSDP GYDPDPTRVQ MGTLVQWCKE VEEGRQSWVQ HKKEATWRLS RLEQQLESEK  360
ARKRREAMEE IEAKIRALRE EEMAFMGRIE SDYREQMSVL QREAESKEAK LVEAWCSKHV  420
KLAKLVDQIG GHGHNNHASH GFTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	3e-56	MYB family protein