PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0007641.1_g000003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 25475.2 Da PI: 4.7066 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48 | 2.2e-15 | 47 | 107 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql++L+el++ ++p+ e+++ + +l +++ ++V++WFqN +a+e++ Rmu_sc0007641.1_g000003.1 47 NRWAPTPAQLRILQELYYDraLKNPTPEQIQGICLHLkpygQIENKNVFFWFQNLKARERQ 107 7****************96579*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 91.6 | 7.1e-30 | 45 | 108 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+Ptp Q++iL+ely+ ++l++P+ e+iq i +L+ yG+ie+kNVf+WFQN kaRerqk Rmu_sc0007641.1_g000003.1 45 TNNRWAPTPAQLRILQELYYdRALKNPTPEQIQGICLHLKPYGQIENKNVFFWFQNLKARERQK 108 679***************9879*****************************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 231 aa Download sequence |
MEPRTLQLME LQTQQHMELQ QQQPTEEGGS NQAAGSSANT PIRPTNNRWA PTPAQLRILQ 60 ELYYDRALKN PTPEQIQGIC LHLKPYGQIE NKNVFFWFQN LKARERQKLK EIRNVRVGGS 120 LDLKFGSTSA TDGGRSIDLN FGSTDSTGDD GSIDLTLGLQ SFMERRGGDH QDVETLPLFP 180 EHGEDILGNP KTTSEEVNTF GYYSGGSGSY NSGSPVSLEL SLNPFGAADL A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17950.1 | 4e-23 | WOX family protein |