PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006592.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 278aa    MW: 31222.9 Da    PI: 4.8486
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006592.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.97.1e-161461148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WT+eEd++l++ +   G  +W+++++  g++R++k+c++rw +yl
  Rmu_sc0006592.1_g000003.1 14 KGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                               79********************************************97 PP
2Myb_DNA-binding53.84.6e-1770111447
                                S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
  Rmu_sc0006592.1_g000003.1  70 LTESEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                                69*****************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL TESEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLRMG  120
IDPVTHEPLH KDQDDLINKE TIISSHTNQA NNILPQSTTE NSSSNSSPAE NSSSSSSPNE  180
NSSGDDQSTL IDSICNVDES LMNSLWVDET PLIDALWNSD QVPDGGNYIE NGMGVQSNWE  240
ENCSWLLDCQ DFGVHDFGVD CFIETELNAL DTLGMEKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.17e-98MYB family protein