PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G22680.1 | ||||||||
Common Name | AtMYB85, MYB85 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 30408.9 Da PI: 5.0698 | ||||||||
Description | myb domain protein 85 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 9.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l++ + G +W++ ++ g++R++k+c++rw +yl AT4G22680.1 14 KGPWTVEEDKKLINFILTNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.6e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +E++l +d+++ lG++ W++Ia++++ gRt++++k++w+++ AT4G22680.1 71 SHDEEQLVIDLHANLGNK-WSKIASRLP-GRTDNEIKNHWNTH 111 789***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.787 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.733 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.76E-10 | 71 | 112 | No hit | No description |
Pfam | PF00249 | 1.5E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000272 | anatomy | protoxylem | ||||
PO:0005352 | anatomy | xylem | ||||
PO:0005848 | anatomy | secondary xylem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRQPCCDKL GVKKGPWTVE EDKKLINFIL TNGHCCWRAL PKLAGLRRCG KSCRLRWTNY 60 LRPDLKRGLL SHDEEQLVID LHANLGNKWS KIASRLPGRT DNEIKNHWNT HIKKKLLKMG 120 IDPMTHQPLN QEPSNIDNSK TIPSNPDDVS VEPKTTNTKY VEISVTTTEE ESSSTVTDQN 180 SSMDNENHLI DNIYDDDELF SYLWSDETTK DEASWSDSNF GVGGTLYDHN ISGADADFPI 240 WSPERINDEK MFLDYCQDFG VHDFGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30685889 | 0.0 | ||||
Genevisible | 254277_at | 0.0 | ||||
Expression Atlas | AT4G22680 | - | ||||
AtGenExpress | AT4G22680 | - | ||||
ATTED-II | AT4G22680 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}. | |||||
Uniprot | TISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative transcription factor (MYB85). | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G22680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT1G32770 (A), AT5G12870 (A) |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G22680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF175993 | 0.0 | AF175993.2 Arabidopsis thaliana putative transcription factor (MYB85) mRNA, complete cds. | |||
GenBank | AK175718 | 0.0 | AK175718.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-25-P15. | |||
GenBank | AK175777 | 0.0 | AK175777.1 Arabidopsis thaliana mRNA for myb-like protein, complete cds, clone: RAFL22-35-I17. | |||
GenBank | AY519608 | 0.0 | AY519608.1 Arabidopsis thaliana MYB transcription factor (At4g22680) mRNA, complete cds. | |||
GenBank | DQ446863 | 0.0 | DQ446863.1 Arabidopsis thaliana clone pENTR221-At4g22680 myb family transcription factor (At4g22680) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_567664.1 | 0.0 | myb domain protein 85 | ||||
Swissprot | Q50EX6 | 5e-91 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | Q94GA6 | 0.0 | Q94GA6_ARATH; MYB transcription factor | ||||
STRING | AT4G22680.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Link Out ? help Back to Top | |
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Phytozome | AT4G22680.1 |
Entrez Gene | 828364 |
iHOP | AT4G22680 |
wikigenes | AT4G22680 |