PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0006572.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

FAR1

Protein Properties

Length: 526aa MW: 59289.9 Da PI: 7.0732

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0006572.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.1	2.6e-27	91	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn+YA +vGF++r++ ++s+ +g+++ rt+vC+keg+r +k++ +k+ r+r+ tr+gCka++ +kk ++g+w+v+k+++eH Rmu_sc0006572.1_g000002.1 91 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSVRPRPPTRVGCKAMISMKKLSNGNWVVAKFVKEH 173 9***************************************9999.99******************************* PP FAR1 86 nHelap 91 H+l+p Rmu_sc0006572.1_g000002.1 174 AHSLTP 179 *975 PP
2	FAR1	91.3	1.3e-28	359	446	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fYn Y+ ++GF++r+++ ++sk++g+i+ rtfvCskeg+r++++++ +k+ ++ra tr+gC a+l +kk + gkw+vtk+ +eH Rmu_sc0006572.1_g000002.1 359 FYNVYGLRMGFNTRMNYLSRSKHDGTIIARTFVCSKEGYRKPDRRD-KKTVNPRAPTRVGCMAMLSIKKLNIGKWVVTKFIKEH 441 9****************************************999.9******************************** PP FAR1 86 nHela 90 nH+l Rmu_sc0006572.1_g000002.1 442 NHALI 446 995 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MNDVNVSLYD GHLILLYYVA FVNTQNGASD DLADVELRLN NDDAILGTSV GEVSNIGQTE 60 QVGQNSASLE VEADEPYVGQ EFESEAAAHA FYNAYALRVG FRTRVNDLSR SRVDGSVIAR 120 TLVCNKEGYR VADKRDRKSV RPRPPTRVGC KAMISMKKLS NGNWVVAKFV KEHAHSLTPG 180 KSENGLNDES SDEQIKIKEL TQQLMVERKR SASYRKIIDL LFNHIDDHTQ HLSQKILRVN 240 DILKDIASSE AKGRSIGTDQ GKPVIFIAKF TCDSLNLHIF AVDSVLDINV NEEVSTGSTD 300 TEFKHSNDGA LVGTSLQKIL WVVQNDERTQ NSSKDGSVVE VDEPYVGQEF DTEVNAQAFY 360 NVYGLRMGFN TRMNYLSRSK HDGTIIARTF VCSKEGYRKP DRRDKKTVNP RAPTRVGCMA 420 MLSIKKLNIG KWVVTKFIKE HNHALIASKR PKGLIEDQIP DDKTKIEELT GELFLERERS 480 ASLRKVIDLL FEHIEEHTQD LSKKVQYVVD KVKEIESEGT DRHKLR

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MNDVNVSLYD GHLILLYYVA FVNTQNGASD DLADVELRLN NDDAILGTSV GEVSNIGQTE  60
QVGQNSASLE VEADEPYVGQ EFESEAAAHA FYNAYALRVG FRTRVNDLSR SRVDGSVIAR  120
TLVCNKEGYR VADKRDRKSV RPRPPTRVGC KAMISMKKLS NGNWVVAKFV KEHAHSLTPG  180
KSENGLNDES SDEQIKIKEL TQQLMVERKR SASYRKIIDL LFNHIDDHTQ HLSQKILRVN  240
DILKDIASSE AKGRSIGTDQ GKPVIFIAKF TCDSLNLHIF AVDSVLDINV NEEVSTGSTD  300
TEFKHSNDGA LVGTSLQKIL WVVQNDERTQ NSSKDGSVVE VDEPYVGQEF DTEVNAQAFY  360
NVYGLRMGFN TRMNYLSRSK HDGTIIARTF VCSKEGYRKP DRRDKKTVNP RAPTRVGCMA  420
MLSIKKLNIG KWVVTKFIKE HNHALIASKR PKGLIEDQIP DDKTKIEELT GELFLERERS  480
ASLRKVIDLL FEHIEEHTQD LSKKVQYVVD KVKEIESEGT DRHKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-63	FAR1 family protein