PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006473.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ZF-HD
Protein Properties Length: 347aa    MW: 37492.8 Da    PI: 8.6993
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006473.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.81.1e-3260117258
                ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                ++v+Y+eClkNhAas+Ggha+DGCgEf ps+ ++ +++++lkCaACgCHRnFHRr+  
  Rmu_sc0006473.1_g000005.1  60 TAVVYRECLKNHAASIGGHALDGCGEFFPSPISNaADPTSLKCAACGCHRNFHRRDAP 117
                                5799**************************999989*******************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MDYKPISTTA TATATATINT PDTDTELIPT SDPKSGAFRS LSFNNGPLKP RHPLPPPPHT  60
AVVYRECLKN HAASIGGHAL DGCGEFFPSP ISNAADPTSL KCAACGCHRN FHRRDAPDEP  120
RAFTPPKALL VSPTPHHRLL LPPPAQHSSS PSPSRSTSPG PSTTLSPHSP PPVSHVPPSF  180
FGTPSQMLLA LSSAAFIAPP PSDEKVRNPT AGKTGRKRSR TKFSQEQKDK MFCFADKLGW  240
KLQRSEEKFV EDFCDGIGIG RNVFKVWMHN NKHHMMKKQR LLSSAGLIND GDDGGDAGGG  300
ASFDSTAEEN NNNNNVNVII DSHNESSRDN HHHQRFYLSN NGSSSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-50ZF-HD family protein