PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006463.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 326aa    MW: 36863.4 Da    PI: 4.7204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006463.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.28.1e-131156146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                               +g+W +eEde l++ vk+ G+++W++I ++  + Rt+k+c++rw +
  Rmu_sc0006463.1_g000019.1 11 KGPWKAEEDEVLLNHVKKCGPRDWSSIRSKGLLQRTGKSCRLRWVN 56
                               79*************************8887799**********87 PP
2Myb_DNA-binding43.57.3e-1467106344
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                +++ eE+   +++ +q+G++ W++Ia +++ gRt++++k++w
  Rmu_sc0006463.1_g000019.1  67 KFSLEEERVVIELQAQFGNK-WAKIATHLP-GRTDNDVKNFW 106
                                799*****************.*********.*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MEGKREEGIR KGPWKAEEDE VLLNHVKKCG PRDWSSIRSK GLLQRTGKSC RLRWVNKLRP  60
NLKNGCKFSL EEERVVIELQ AQFGNKWAKI ATHLPGRTDN DVKNFWSSRQ KRLARILQTS  120
TAAITPSKSH KNRREISVYH DEVPTLEESE YRDNAKHFFF KEIPKFSCSS EGESSSQAAS  180
CSSPCIGNSD AIQMVPLPDL LDSKLLGFEA NPVQQELALP EKNLWIESQP LIPFLENPQP  240
QTDLEFSSDT QELLKLDFDM FTSLDAELSK QLDVEPPFLE PVGSCGNVEG EKIDNPITPD  300
CVFDDFPADM FDQIEPLPNG SNPSDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.12e-76MYB family protein