PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006317.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 263aa    MW: 29803.7 Da    PI: 8.1843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006317.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171360148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+W+++Ed++l+d+++++G g+W+t ++  g+ R++k+c++rw +yl
  Rmu_sc0006317.1_g000008.1 13 KGAWSKQEDQKLIDYIRKHGEGCWRTLPQAAGLLRCGKSCRLRWINYL 60
                               79******************************99************97 PP
2Myb_DNA-binding52.11.5e-1666111148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Rmu_sc0006317.1_g000008.1  66 RGKFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSHL 111
                                899*******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MRKPCCDKQD TNKGAWSKQE DQKLIDYIRK HGEGCWRTLP QAAGLLRCGK SCRLRWINYL  60
RPDLKRGKFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH LRRKLMNMGI  120
DPNNHRPTNT LLPRPHNHHQ SPPQTLKSPA GSGINNFNHE PVVIESKSSR GDDQNCEQVS  180
DGRSCLEDDS SCGGHHLPDL NLDLTVHLSA PNFSSPNDDH QCLIKELNEP IHRPHLNISD  240
PPEMLIGTKS AIFASSTTLP LFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-79MYB family protein