PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0006188.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 513aa    MW: 58245.3 Da    PI: 4.4315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0006188.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.42.8e-381604602295
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL ++Aea + g++ l + +L  +se +sp g++ +Rla+ + +      ++      + l     ++++ ++  aa+k+f 
  Rmu_sc0006188.1_g000008.1 160 RHLLQAFAEAKEYGQKDLEEVILRCISEKVSPIGEASERLAFNLCQEVVDEHQQ----GDDYL-----KQESLKNFEAAFKVFI 234
                                899**************************************9876554444444....22222.....22336788899***** PP

                       GRAS  86 evsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetge 163
                                + +P+ +f+h +aN+aIlea+  e e+vHi+Dfd+ +G+Q   L++aLa+R      l++T+++ +e++      + + eet++
  Rmu_sc0006188.1_g000008.1 235 QNFPYARFAHYVANSAILEAIPVEaETVHIVDFDMREGVQLSQLIEALAQRF---KILKVTAIKWEEEEsdcapPHGRFEETKK 315
                                *********************99989*************************5...57******998877889999********* PP

                       GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkp....gEalaVnlvlqlhrll........desvsles...erdevL...k 229
                                +L++ A+++ ++++ + +   ++edl +e  + k+    +E la n++++l ++                +     +e+L    
  Rmu_sc0006188.1_g000008.1 316 QLQNHARSFALNLKVEEV---AMEDLVTEIKKAKKrgggKEFLAFNCMVSLPHMRrrrsrghvM------EylrLAKELLansG 390
                                ****************98...555553333333335678************9998332222221......12222233331113 PP

                       GRAS 230 lvkslsPkvvvvveqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreiv 295
                                  k++++ ++++ + + +++  n++sF   f e l +y al++s+e ++p +  e+r+ +E  ++++ ++
  Rmu_sc0006188.1_g000008.1 391 NSKTTKSGIITFGDGDaCERlgNHSSFSSFFNENLVHYQALLESMELNFPGHLaEARMAMECIFIAPFVS 460
                                45667889*******97666799**************************988769999999998887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    
MESAFLEPWF FENFIDSSFD QPDFINMDDT PIDSPDFSSL FNSNEVFKIS EIASDPFATL  60
FPGDDLIQVT SQVEEVSMDL EAYETNLMIE GFYGNSLEGS EGSFPSQQAS SHQFSAEGND  120
VWSPNSIVNS EASSMDSTSI QSPLDLPREE ERIENQLSIR HLLQAFAEAK EYGQKDLEEV  180
ILRCISEKVS PIGEASERLA FNLCQEVVDE HQQGDDYLKQ ESLKNFEAAF KVFIQNFPYA  240
RFAHYVANSA ILEAIPVEAE TVHIVDFDMR EGVQLSQLIE ALAQRFKILK VTAIKWEEEE  300
SDCAPPHGRF EETKKQLQNH ARSFALNLKV EEVAMEDLVT EIKKAKKRGG GKEFLAFNCM  360
VSLPHMRRRR SRGHVMEYLR LAKELLANSG NSKTTKSGII TFGDGDACER LGNHSSFSSF  420
FNENLVHYQA LLESMELNFP GHLAEARMAM ECIFIAPFVS SQAWFQKWTE MKDCHVQPWF  480
GLEGRRLSKE NLMEAKEIVG DERSYGIRIE GLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-15GRAS family protein